Hb_025236_030

Information

Type -
Description -
Location Contig25236: 50143-51321
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26408: 49007-49546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025236_030 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_014879_010 0.2809563563 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001206_010 0.341641031 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_164019_010 0.3480367047 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_012150_060 0.3481525963 - - -
6 Hb_155256_020 0.3731497246 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
7 Hb_000940_140 0.380201955 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_115791_020 0.3816653059 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
9 Hb_003636_040 0.3929501213 - - mitochondrial translational initiation factor, putative [Ricinus communis]
10 Hb_007042_010 0.397161343 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000172_130 0.4047703251 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
12 Hb_069033_010 0.4055409363 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
13 Hb_000154_010 0.4079910098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000101_260 0.4086119311 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_055314_010 0.4231695955 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000640_030 0.423315017 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_003494_040 0.4263477488 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
18 Hb_006237_020 0.4279856737 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000050_180 0.4309241371 - - -
20 Hb_033279_010 0.4310979461 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_025236_030 Hb_025236_030 Hb_014879_010 Hb_014879_010 Hb_025236_030--Hb_014879_010 Hb_001206_010 Hb_001206_010 Hb_025236_030--Hb_001206_010 Hb_164019_010 Hb_164019_010 Hb_025236_030--Hb_164019_010 Hb_012150_060 Hb_012150_060 Hb_025236_030--Hb_012150_060 Hb_155256_020 Hb_155256_020 Hb_025236_030--Hb_155256_020 Hb_000940_140 Hb_000940_140 Hb_025236_030--Hb_000940_140 Hb_014879_010--Hb_001206_010 Hb_014879_010--Hb_012150_060 Hb_000172_130 Hb_000172_130 Hb_014879_010--Hb_000172_130 Hb_000101_260 Hb_000101_260 Hb_014879_010--Hb_000101_260 Hb_004981_010 Hb_004981_010 Hb_014879_010--Hb_004981_010 Hb_001206_010--Hb_000172_130 Hb_024411_010 Hb_024411_010 Hb_001206_010--Hb_024411_010 Hb_057451_040 Hb_057451_040 Hb_001206_010--Hb_057451_040 Hb_038044_020 Hb_038044_020 Hb_001206_010--Hb_038044_020 Hb_001062_020 Hb_001062_020 Hb_001206_010--Hb_001062_020 Hb_009615_120 Hb_009615_120 Hb_164019_010--Hb_009615_120 Hb_011310_080 Hb_011310_080 Hb_164019_010--Hb_011310_080 Hb_015934_030 Hb_015934_030 Hb_164019_010--Hb_015934_030 Hb_007317_130 Hb_007317_130 Hb_164019_010--Hb_007317_130 Hb_000700_080 Hb_000700_080 Hb_164019_010--Hb_000700_080 Hb_001269_370 Hb_001269_370 Hb_164019_010--Hb_001269_370 Hb_001842_110 Hb_001842_110 Hb_012150_060--Hb_001842_110 Hb_000236_330 Hb_000236_330 Hb_012150_060--Hb_000236_330 Hb_182750_010 Hb_182750_010 Hb_012150_060--Hb_182750_010 Hb_012150_060--Hb_001206_010 Hb_153258_020 Hb_153258_020 Hb_012150_060--Hb_153258_020 Hb_133385_010 Hb_133385_010 Hb_155256_020--Hb_133385_010 Hb_002805_130 Hb_002805_130 Hb_155256_020--Hb_002805_130 Hb_005137_030 Hb_005137_030 Hb_155256_020--Hb_005137_030 Hb_001821_130 Hb_001821_130 Hb_155256_020--Hb_001821_130 Hb_010874_040 Hb_010874_040 Hb_155256_020--Hb_010874_040 Hb_001999_280 Hb_001999_280 Hb_155256_020--Hb_001999_280 Hb_003636_040 Hb_003636_040 Hb_000940_140--Hb_003636_040 Hb_001172_090 Hb_001172_090 Hb_000940_140--Hb_001172_090 Hb_063405_020 Hb_063405_020 Hb_000940_140--Hb_063405_020 Hb_069251_010 Hb_069251_010 Hb_000940_140--Hb_069251_010 Hb_000690_120 Hb_000690_120 Hb_000940_140--Hb_000690_120 Hb_123046_010 Hb_123046_010 Hb_000940_140--Hb_123046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.207152 0 0 0 0.0903512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0914493 0 0.12691 0 0.140539

CAGE analysis