Hb_000700_080

Information

Type -
Description -
Location Contig700: 151217-152596
Sequence    

Annotation

kegg
ID rcu:RCOM_1721290
description hypothetical protein
nr
ID XP_002521117.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3EB08
description F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1
trembl
ID B9S548
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005489_070 0.1597036906 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
3 Hb_000656_310 0.1598806247 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
4 Hb_009615_120 0.1643997717 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
5 Hb_001117_130 0.1689134078 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
6 Hb_001616_110 0.1716943237 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
7 Hb_002343_010 0.1726475939 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_000849_120 0.1741869388 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
9 Hb_000016_200 0.1776442465 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_120 0.1818897905 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
11 Hb_004917_010 0.183345029 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
12 Hb_001699_170 0.1840379102 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000035_350 0.184326534 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
14 Hb_000656_390 0.1850654588 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
15 Hb_000599_210 0.1851256663 - - serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_001269_370 0.1862957471 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
17 Hb_001214_180 0.1885067055 - - -
18 Hb_140459_010 0.1895417571 - - thioredoxin f-type, putative [Ricinus communis]
19 Hb_005016_010 0.1913833915 - - AMP dependent CoA ligase, putative [Ricinus communis]
20 Hb_001541_070 0.1920993042 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000700_080 Hb_000700_080 Hb_005489_070 Hb_005489_070 Hb_000700_080--Hb_005489_070 Hb_000656_310 Hb_000656_310 Hb_000700_080--Hb_000656_310 Hb_009615_120 Hb_009615_120 Hb_000700_080--Hb_009615_120 Hb_001117_130 Hb_001117_130 Hb_000700_080--Hb_001117_130 Hb_001616_110 Hb_001616_110 Hb_000700_080--Hb_001616_110 Hb_002343_010 Hb_002343_010 Hb_000700_080--Hb_002343_010 Hb_009658_030 Hb_009658_030 Hb_005489_070--Hb_009658_030 Hb_000270_120 Hb_000270_120 Hb_005489_070--Hb_000270_120 Hb_004204_010 Hb_004204_010 Hb_005489_070--Hb_004204_010 Hb_001541_070 Hb_001541_070 Hb_005489_070--Hb_001541_070 Hb_005977_070 Hb_005977_070 Hb_005489_070--Hb_005977_070 Hb_000170_130 Hb_000170_130 Hb_005489_070--Hb_000170_130 Hb_001226_140 Hb_001226_140 Hb_000656_310--Hb_001226_140 Hb_000465_280 Hb_000465_280 Hb_000656_310--Hb_000465_280 Hb_000504_180 Hb_000504_180 Hb_000656_310--Hb_000504_180 Hb_022092_030 Hb_022092_030 Hb_000656_310--Hb_022092_030 Hb_001080_300 Hb_001080_300 Hb_000656_310--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_000656_310--Hb_138585_080 Hb_000329_290 Hb_000329_290 Hb_009615_120--Hb_000329_290 Hb_009615_120--Hb_000656_310 Hb_032717_060 Hb_032717_060 Hb_009615_120--Hb_032717_060 Hb_001214_180 Hb_001214_180 Hb_009615_120--Hb_001214_180 Hb_140459_010 Hb_140459_010 Hb_009615_120--Hb_140459_010 Hb_009778_060 Hb_009778_060 Hb_009615_120--Hb_009778_060 Hb_001159_190 Hb_001159_190 Hb_001117_130--Hb_001159_190 Hb_001619_040 Hb_001619_040 Hb_001117_130--Hb_001619_040 Hb_000753_230 Hb_000753_230 Hb_001117_130--Hb_000753_230 Hb_000656_390 Hb_000656_390 Hb_001117_130--Hb_000656_390 Hb_001117_130--Hb_000656_310 Hb_066920_030 Hb_066920_030 Hb_001117_130--Hb_066920_030 Hb_027654_080 Hb_027654_080 Hb_001616_110--Hb_027654_080 Hb_001616_110--Hb_002343_010 Hb_002766_050 Hb_002766_050 Hb_001616_110--Hb_002766_050 Hb_000340_290 Hb_000340_290 Hb_001616_110--Hb_000340_290 Hb_000920_130 Hb_000920_130 Hb_001616_110--Hb_000920_130 Hb_001959_120 Hb_001959_120 Hb_001616_110--Hb_001959_120 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20822 1.71775 0.736856 1.68318 0.0557395 0.16655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.423437 0.666147 1.66981 0.720988 2.33889

CAGE analysis