Hb_015934_030

Information

Type -
Description -
Location Contig15934: 12651-14715
Sequence    

Annotation

kegg
ID rcu:RCOM_1194880
description ubiquitin-protein ligase, putative
nr
ID XP_002520393.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S324
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1194880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015934_030 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000364_040 0.1615306671 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
3 Hb_000077_390 0.1918121338 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
4 Hb_003207_100 0.2113392475 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
5 Hb_003605_240 0.2172536322 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
6 Hb_003077_050 0.2201336861 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
7 Hb_007007_070 0.2218697528 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
8 Hb_000019_140 0.2225507112 - - Light-regulated protein precursor, putative [Ricinus communis]
9 Hb_001484_020 0.2250299924 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_005499_010 0.2260152958 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_011631_010 0.2277465433 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
12 Hb_048755_020 0.2286362089 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
13 Hb_002400_160 0.2293097858 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
14 Hb_000071_140 0.2318188677 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
15 Hb_000084_240 0.2322382576 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
16 Hb_000976_280 0.2358184358 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
17 Hb_028207_040 0.2368231101 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
18 Hb_003120_050 0.2376600014 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
19 Hb_003224_030 0.2387171098 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
20 Hb_002897_050 0.2388837747 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]

Gene co-expression network

sample Hb_015934_030 Hb_015934_030 Hb_000364_040 Hb_000364_040 Hb_015934_030--Hb_000364_040 Hb_000077_390 Hb_000077_390 Hb_015934_030--Hb_000077_390 Hb_003207_100 Hb_003207_100 Hb_015934_030--Hb_003207_100 Hb_003605_240 Hb_003605_240 Hb_015934_030--Hb_003605_240 Hb_003077_050 Hb_003077_050 Hb_015934_030--Hb_003077_050 Hb_007007_070 Hb_007007_070 Hb_015934_030--Hb_007007_070 Hb_000364_040--Hb_003605_240 Hb_000256_130 Hb_000256_130 Hb_000364_040--Hb_000256_130 Hb_000976_280 Hb_000976_280 Hb_000364_040--Hb_000976_280 Hb_000364_040--Hb_000077_390 Hb_011631_010 Hb_011631_010 Hb_000364_040--Hb_011631_010 Hb_001484_020 Hb_001484_020 Hb_000077_390--Hb_001484_020 Hb_000077_390--Hb_003077_050 Hb_000077_390--Hb_000976_280 Hb_127311_010 Hb_127311_010 Hb_000077_390--Hb_127311_010 Hb_013241_010 Hb_013241_010 Hb_000077_390--Hb_013241_010 Hb_000042_330 Hb_000042_330 Hb_000077_390--Hb_000042_330 Hb_002876_070 Hb_002876_070 Hb_003207_100--Hb_002876_070 Hb_006846_020 Hb_006846_020 Hb_003207_100--Hb_006846_020 Hb_007007_080 Hb_007007_080 Hb_003207_100--Hb_007007_080 Hb_000272_110 Hb_000272_110 Hb_003207_100--Hb_000272_110 Hb_000038_040 Hb_000038_040 Hb_003207_100--Hb_000038_040 Hb_000069_330 Hb_000069_330 Hb_003207_100--Hb_000069_330 Hb_002701_220 Hb_002701_220 Hb_003605_240--Hb_002701_220 Hb_003605_240--Hb_000976_280 Hb_001123_200 Hb_001123_200 Hb_003605_240--Hb_001123_200 Hb_006909_060 Hb_006909_060 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_003077_050--Hb_001484_020 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000120_160 Hb_000120_160 Hb_007007_070--Hb_000120_160 Hb_007007_070--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_007007_070--Hb_001288_070 Hb_001863_150 Hb_001863_150 Hb_007007_070--Hb_001863_150 Hb_007007_070--Hb_000364_040 Hb_005147_040 Hb_005147_040 Hb_007007_070--Hb_005147_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638594 0.478665 0.177361 0.0304725 0 0.0565488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.073589 0.0578576 0.104007 0.0234739 0.115357

CAGE analysis