Hb_000827_060

Information

Type -
Description -
Location Contig827: 102483-107664
Sequence    

Annotation

kegg
ID pop:POPTR_2151s00200g
description hypothetical protein
nr
ID XP_006387026.1
description hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DSR2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_2151s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59734: 103666-104029 , PASA_asmbl_59735: 104752-105032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000827_060 0.0 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
2 Hb_004020_020 0.1608545075 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
3 Hb_129910_010 0.1688248628 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
4 Hb_000352_340 0.1691206585 - - PREDICTED: importin-13 [Jatropha curcas]
5 Hb_085868_010 0.1712257556 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_003467_030 0.1731739816 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_000883_060 0.1743819595 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
8 Hb_007820_010 0.1744372005 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
9 Hb_165928_040 0.1750853136 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
10 Hb_003032_020 0.1750971768 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
11 Hb_001817_020 0.1758179627 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
12 Hb_003370_050 0.1765082703 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
13 Hb_000019_200 0.1822647297 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
14 Hb_000283_080 0.1877230371 - - -
15 Hb_001005_050 0.1890597241 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
16 Hb_066487_010 0.1891052796 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001341_070 0.1892482999 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
18 Hb_000160_320 0.1894455401 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
19 Hb_003291_010 0.1896854698 - - ATP-dependent protease La, putative [Ricinus communis]
20 Hb_002316_160 0.1897651325 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]

Gene co-expression network

sample Hb_000827_060 Hb_000827_060 Hb_004020_020 Hb_004020_020 Hb_000827_060--Hb_004020_020 Hb_129910_010 Hb_129910_010 Hb_000827_060--Hb_129910_010 Hb_000352_340 Hb_000352_340 Hb_000827_060--Hb_000352_340 Hb_085868_010 Hb_085868_010 Hb_000827_060--Hb_085868_010 Hb_003467_030 Hb_003467_030 Hb_000827_060--Hb_003467_030 Hb_000883_060 Hb_000883_060 Hb_000827_060--Hb_000883_060 Hb_003370_050 Hb_003370_050 Hb_004020_020--Hb_003370_050 Hb_002667_050 Hb_002667_050 Hb_004020_020--Hb_002667_050 Hb_000028_390 Hb_000028_390 Hb_004020_020--Hb_000028_390 Hb_002099_080 Hb_002099_080 Hb_004020_020--Hb_002099_080 Hb_003294_090 Hb_003294_090 Hb_004020_020--Hb_003294_090 Hb_007820_010 Hb_007820_010 Hb_004020_020--Hb_007820_010 Hb_000340_390 Hb_000340_390 Hb_129910_010--Hb_000340_390 Hb_000283_080 Hb_000283_080 Hb_129910_010--Hb_000283_080 Hb_001898_070 Hb_001898_070 Hb_129910_010--Hb_001898_070 Hb_042202_030 Hb_042202_030 Hb_129910_010--Hb_042202_030 Hb_000020_120 Hb_000020_120 Hb_129910_010--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_129910_010--Hb_003688_150 Hb_001440_030 Hb_001440_030 Hb_000352_340--Hb_001440_030 Hb_002908_050 Hb_002908_050 Hb_000352_340--Hb_002908_050 Hb_001876_010 Hb_001876_010 Hb_000352_340--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_000352_340--Hb_000189_550 Hb_000352_340--Hb_000028_390 Hb_000066_170 Hb_000066_170 Hb_000352_340--Hb_000066_170 Hb_002740_110 Hb_002740_110 Hb_085868_010--Hb_002740_110 Hb_085868_010--Hb_000352_340 Hb_019616_020 Hb_019616_020 Hb_085868_010--Hb_019616_020 Hb_004994_220 Hb_004994_220 Hb_085868_010--Hb_004994_220 Hb_000009_320 Hb_000009_320 Hb_085868_010--Hb_000009_320 Hb_002903_060 Hb_002903_060 Hb_085868_010--Hb_002903_060 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_000010_340 Hb_000010_340 Hb_000883_060--Hb_000010_340 Hb_001341_070 Hb_001341_070 Hb_000883_060--Hb_001341_070 Hb_001671_010 Hb_001671_010 Hb_000883_060--Hb_001671_010 Hb_015941_020 Hb_015941_020 Hb_000883_060--Hb_015941_020 Hb_006711_100 Hb_006711_100 Hb_000883_060--Hb_006711_100 Hb_000913_020 Hb_000913_020 Hb_000883_060--Hb_000913_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439664 0.117168 0.0446816 0.0972585 0.134708 0.137621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178868 0.0351729 0.390876 0.18346 0.289786

CAGE analysis