Hb_085868_010

Information

Type -
Description -
Location Contig85868: 14-760
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EU35
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023328 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085868_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_002740_110 0.1418253833 - - PREDICTED: phytochrome A [Jatropha curcas]
3 Hb_000352_340 0.1447503872 - - PREDICTED: importin-13 [Jatropha curcas]
4 Hb_019616_020 0.1458140525 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
5 Hb_004994_220 0.1465332152 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_000009_320 0.1476425098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
7 Hb_002903_060 0.1483352708 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
8 Hb_000028_280 0.1486849226 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
9 Hb_003605_110 0.1494544259 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
10 Hb_000976_300 0.1501097982 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
11 Hb_000494_070 0.1506230313 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
12 Hb_004837_130 0.1513963096 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
13 Hb_007044_140 0.1527269982 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
14 Hb_000377_090 0.1535071077 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
15 Hb_001017_050 0.1546392107 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_001007_060 0.1560049124 - - Transcriptional corepressor SEUSS [Glycine soja]
17 Hb_000999_050 0.1562870975 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
18 Hb_004143_130 0.1568630107 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
19 Hb_012035_050 0.157280377 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
20 Hb_002213_070 0.1574023417 - - epsilon-adaptin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_085868_010 Hb_085868_010 Hb_002740_110 Hb_002740_110 Hb_085868_010--Hb_002740_110 Hb_000352_340 Hb_000352_340 Hb_085868_010--Hb_000352_340 Hb_019616_020 Hb_019616_020 Hb_085868_010--Hb_019616_020 Hb_004994_220 Hb_004994_220 Hb_085868_010--Hb_004994_220 Hb_000009_320 Hb_000009_320 Hb_085868_010--Hb_000009_320 Hb_002903_060 Hb_002903_060 Hb_085868_010--Hb_002903_060 Hb_003253_040 Hb_003253_040 Hb_002740_110--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_002740_110--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_004143_130 Hb_004143_130 Hb_002740_110--Hb_004143_130 Hb_001440_030 Hb_001440_030 Hb_000352_340--Hb_001440_030 Hb_002908_050 Hb_002908_050 Hb_000352_340--Hb_002908_050 Hb_001876_010 Hb_001876_010 Hb_000352_340--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_000352_340--Hb_000189_550 Hb_000028_390 Hb_000028_390 Hb_000352_340--Hb_000028_390 Hb_000066_170 Hb_000066_170 Hb_000352_340--Hb_000066_170 Hb_000011_060 Hb_000011_060 Hb_019616_020--Hb_000011_060 Hb_019616_020--Hb_001876_010 Hb_000053_040 Hb_000053_040 Hb_019616_020--Hb_000053_040 Hb_011674_020 Hb_011674_020 Hb_019616_020--Hb_011674_020 Hb_002600_150 Hb_002600_150 Hb_019616_020--Hb_002600_150 Hb_019616_020--Hb_000028_390 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_004994_220--Hb_010174_110 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_000049_310 Hb_000049_310 Hb_000009_320--Hb_000049_310 Hb_003464_060 Hb_003464_060 Hb_000009_320--Hb_003464_060 Hb_000009_320--Hb_002903_060 Hb_000280_080 Hb_000280_080 Hb_000009_320--Hb_000280_080 Hb_004907_110 Hb_004907_110 Hb_000009_320--Hb_004907_110 Hb_003058_190 Hb_003058_190 Hb_000009_320--Hb_003058_190 Hb_007254_070 Hb_007254_070 Hb_002903_060--Hb_007254_070 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_002903_060--Hb_000028_280 Hb_000191_150 Hb_000191_150 Hb_002903_060--Hb_000191_150 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104612 0.22683 0.0968961 0.116985 0.253739 0.263261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.369952 0.0581729 0.313594 0.283266 0.231867

CAGE analysis