Hb_000608_200

Information

Type -
Description -
Location Contig608: 91188-91625
Sequence    

Annotation

kegg
ID pxb:103955238
description tyrosine-sulfated glycopeptide receptor 1-like
nr
ID XP_009365390.1
description PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID F6HG83
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03210 PE=4 SV=1
Gene Ontology
ID GO:0016491
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50832: 91474-91776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_200 0.0 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Pyrus x bretschneideri]
2 Hb_048626_010 0.2396872802 - - -
3 Hb_023755_010 0.2428494856 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_005511_090 0.2430800944 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
5 Hb_031421_010 0.2619047442 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
6 Hb_000883_030 0.2720421185 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
7 Hb_002875_050 0.2760657597 - - PREDICTED: proteoglycan 4 [Jatropha curcas]
8 Hb_127704_010 0.2801377935 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000190_190 0.2827106619 - - PREDICTED: BI1-like protein [Gossypium raimondii]
10 Hb_001232_100 0.2889736142 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_003032_020 0.2893204677 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic [Jatropha curcas]
12 Hb_011004_020 0.2895540572 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
13 Hb_004984_080 0.2932244013 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
14 Hb_010998_020 0.2967540924 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
15 Hb_165928_040 0.2993006978 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
16 Hb_000025_270 0.3031787106 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
17 Hb_001963_100 0.3035701103 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
18 Hb_000007_120 0.3051478291 desease resistance Gene Name: PRK uridine cytidine kinase I, putative [Ricinus communis]
19 Hb_000345_210 0.3071134867 - - PREDICTED: uncharacterized protein LOC105647523 [Jatropha curcas]
20 Hb_067402_010 0.3079177061 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000608_200 Hb_000608_200 Hb_048626_010 Hb_048626_010 Hb_000608_200--Hb_048626_010 Hb_023755_010 Hb_023755_010 Hb_000608_200--Hb_023755_010 Hb_005511_090 Hb_005511_090 Hb_000608_200--Hb_005511_090 Hb_031421_010 Hb_031421_010 Hb_000608_200--Hb_031421_010 Hb_000883_030 Hb_000883_030 Hb_000608_200--Hb_000883_030 Hb_002875_050 Hb_002875_050 Hb_000608_200--Hb_002875_050 Hb_048626_010--Hb_023755_010 Hb_000252_020 Hb_000252_020 Hb_048626_010--Hb_000252_020 Hb_130192_030 Hb_130192_030 Hb_048626_010--Hb_130192_030 Hb_012052_020 Hb_012052_020 Hb_048626_010--Hb_012052_020 Hb_001427_030 Hb_001427_030 Hb_048626_010--Hb_001427_030 Hb_003032_020 Hb_003032_020 Hb_023755_010--Hb_003032_020 Hb_000442_080 Hb_000442_080 Hb_023755_010--Hb_000442_080 Hb_000215_140 Hb_000215_140 Hb_023755_010--Hb_000215_140 Hb_000251_090 Hb_000251_090 Hb_023755_010--Hb_000251_090 Hb_000335_020 Hb_000335_020 Hb_023755_010--Hb_000335_020 Hb_023755_010--Hb_000883_030 Hb_012753_010 Hb_012753_010 Hb_005511_090--Hb_012753_010 Hb_015978_050 Hb_015978_050 Hb_005511_090--Hb_015978_050 Hb_000054_110 Hb_000054_110 Hb_005511_090--Hb_000054_110 Hb_005731_150 Hb_005731_150 Hb_005511_090--Hb_005731_150 Hb_000236_450 Hb_000236_450 Hb_005511_090--Hb_000236_450 Hb_000099_160 Hb_000099_160 Hb_031421_010--Hb_000099_160 Hb_001347_060 Hb_001347_060 Hb_031421_010--Hb_001347_060 Hb_002333_060 Hb_002333_060 Hb_031421_010--Hb_002333_060 Hb_165928_040 Hb_165928_040 Hb_031421_010--Hb_165928_040 Hb_001936_090 Hb_001936_090 Hb_031421_010--Hb_001936_090 Hb_000025_270 Hb_000025_270 Hb_031421_010--Hb_000025_270 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_001491_030 Hb_001491_030 Hb_002875_050--Hb_001491_030 Hb_000421_130 Hb_000421_130 Hb_002875_050--Hb_000421_130 Hb_000058_110 Hb_000058_110 Hb_002875_050--Hb_000058_110 Hb_004306_040 Hb_004306_040 Hb_002875_050--Hb_004306_040 Hb_001675_190 Hb_001675_190 Hb_002875_050--Hb_001675_190 Hb_002875_050--Hb_003912_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0619847 0.055566 0.0959139 0.346151 0.0646105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.132277 0.217286 0.167496 0.239151

CAGE analysis