Hb_012052_020

Information

Type -
Description -
Location Contig12052: 8574-9017
Sequence    

Annotation

kegg
ID bvg:104895918
description uncharacterized LOC104895918
nr
ID XP_010251928.1
description PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5B196
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06362: 7894-8717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012052_020 0.0 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
2 Hb_089032_020 0.1679461689 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
3 Hb_032202_170 0.1773471954 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
4 Hb_000377_070 0.1788820975 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 [Jatropha curcas]
5 Hb_022318_010 0.1795611579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009775_020 0.1833300351 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
7 Hb_174541_020 0.1862551011 - - PREDICTED: cysteine proteinase inhibitor 6-like [Populus euphratica]
8 Hb_000589_150 0.1874535176 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
9 Hb_000679_300 0.1888001938 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
10 Hb_000640_230 0.1903095803 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001369_420 0.1908950375 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
12 Hb_030565_080 0.1910231946 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_000025_140 0.1911044627 - - las1-like family protein [Populus trichocarpa]
14 Hb_001310_110 0.1922149818 - - unnamed protein product [Coffea canephora]
15 Hb_003656_110 0.1927177449 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
16 Hb_008695_180 0.1935249748 - - eukaryotic translation initiation factor [Hevea brasiliensis]
17 Hb_000960_060 0.1940003043 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
18 Hb_001776_140 0.1949300342 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_001635_180 0.1955559522 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
20 Hb_001975_140 0.1960693504 - - PREDICTED: urease accessory protein F [Jatropha curcas]

Gene co-expression network

sample Hb_012052_020 Hb_012052_020 Hb_089032_020 Hb_089032_020 Hb_012052_020--Hb_089032_020 Hb_032202_170 Hb_032202_170 Hb_012052_020--Hb_032202_170 Hb_000377_070 Hb_000377_070 Hb_012052_020--Hb_000377_070 Hb_022318_010 Hb_022318_010 Hb_012052_020--Hb_022318_010 Hb_009775_020 Hb_009775_020 Hb_012052_020--Hb_009775_020 Hb_174541_020 Hb_174541_020 Hb_012052_020--Hb_174541_020 Hb_003788_050 Hb_003788_050 Hb_089032_020--Hb_003788_050 Hb_002067_040 Hb_002067_040 Hb_089032_020--Hb_002067_040 Hb_000640_230 Hb_000640_230 Hb_089032_020--Hb_000640_230 Hb_001518_040 Hb_001518_040 Hb_089032_020--Hb_001518_040 Hb_000358_250 Hb_000358_250 Hb_089032_020--Hb_000358_250 Hb_001300_070 Hb_001300_070 Hb_089032_020--Hb_001300_070 Hb_000787_090 Hb_000787_090 Hb_032202_170--Hb_000787_090 Hb_132697_010 Hb_132697_010 Hb_032202_170--Hb_132697_010 Hb_004724_320 Hb_004724_320 Hb_032202_170--Hb_004724_320 Hb_010368_020 Hb_010368_020 Hb_032202_170--Hb_010368_020 Hb_003656_110 Hb_003656_110 Hb_032202_170--Hb_003656_110 Hb_000861_070 Hb_000861_070 Hb_032202_170--Hb_000861_070 Hb_000265_240 Hb_000265_240 Hb_000377_070--Hb_000265_240 Hb_005731_050 Hb_005731_050 Hb_000377_070--Hb_005731_050 Hb_002784_080 Hb_002784_080 Hb_000377_070--Hb_002784_080 Hb_002338_060 Hb_002338_060 Hb_000377_070--Hb_002338_060 Hb_001234_080 Hb_001234_080 Hb_000377_070--Hb_001234_080 Hb_001635_180 Hb_001635_180 Hb_000377_070--Hb_001635_180 Hb_000002_380 Hb_000002_380 Hb_022318_010--Hb_000002_380 Hb_022318_010--Hb_005731_050 Hb_003435_020 Hb_003435_020 Hb_022318_010--Hb_003435_020 Hb_003108_020 Hb_003108_020 Hb_022318_010--Hb_003108_020 Hb_003502_090 Hb_003502_090 Hb_022318_010--Hb_003502_090 Hb_004032_010 Hb_004032_010 Hb_022318_010--Hb_004032_010 Hb_007059_010 Hb_007059_010 Hb_009775_020--Hb_007059_010 Hb_004310_150 Hb_004310_150 Hb_009775_020--Hb_004310_150 Hb_040262_010 Hb_040262_010 Hb_009775_020--Hb_040262_010 Hb_005618_160 Hb_005618_160 Hb_009775_020--Hb_005618_160 Hb_010712_030 Hb_010712_030 Hb_009775_020--Hb_010712_030 Hb_000960_060 Hb_000960_060 Hb_009775_020--Hb_000960_060 Hb_001369_420 Hb_001369_420 Hb_174541_020--Hb_001369_420 Hb_002609_110 Hb_002609_110 Hb_174541_020--Hb_002609_110 Hb_008695_180 Hb_008695_180 Hb_174541_020--Hb_008695_180 Hb_003030_020 Hb_003030_020 Hb_174541_020--Hb_003030_020 Hb_000025_140 Hb_000025_140 Hb_174541_020--Hb_000025_140 Hb_001252_080 Hb_001252_080 Hb_174541_020--Hb_001252_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.488281 0.340487 0.162613 0.887301 1.73682 0.698602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328737 1.42017 0.425657 0.326351 0.468631

CAGE analysis