Hb_022318_010

Information

Type -
Description -
Location Contig22318: 10381-11886
Sequence    

Annotation

kegg
ID rcu:RCOM_1378080
description hypothetical protein
nr
ID XP_002515661.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5U2S3
description Zinc finger with UFM1-specific peptidase domain protein OS=Rattus norvegicus GN=Zufsp PE=2 SV=1
trembl
ID B9RPJ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1378080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23094: 10535-10800 , PASA_asmbl_23095: 11033-33388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022318_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000002_380 0.0859182197 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
3 Hb_005731_050 0.0910794623 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
4 Hb_003435_020 0.0938120957 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_003108_020 0.0952847439 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
6 Hb_003502_090 0.0953221979 - - ATP synthase subunit d, putative [Ricinus communis]
7 Hb_004032_010 0.0975082227 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
8 Hb_006693_020 0.1026235925 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
9 Hb_000960_060 0.1035670315 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
10 Hb_005045_060 0.105645163 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
11 Hb_004108_070 0.1066146889 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
12 Hb_154948_040 0.1093927403 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
13 Hb_000656_170 0.1099291869 - - lsm1, putative [Ricinus communis]
14 Hb_000390_300 0.1111638064 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_001935_130 0.1124951158 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
16 Hb_000160_060 0.1130919254 - - unknown [Populus trichocarpa]
17 Hb_004473_040 0.113874777 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001828_190 0.1144196776 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
19 Hb_008494_100 0.1149831131 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
20 Hb_003416_010 0.115222277 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]

Gene co-expression network

sample Hb_022318_010 Hb_022318_010 Hb_000002_380 Hb_000002_380 Hb_022318_010--Hb_000002_380 Hb_005731_050 Hb_005731_050 Hb_022318_010--Hb_005731_050 Hb_003435_020 Hb_003435_020 Hb_022318_010--Hb_003435_020 Hb_003108_020 Hb_003108_020 Hb_022318_010--Hb_003108_020 Hb_003502_090 Hb_003502_090 Hb_022318_010--Hb_003502_090 Hb_004032_010 Hb_004032_010 Hb_022318_010--Hb_004032_010 Hb_002105_100 Hb_002105_100 Hb_000002_380--Hb_002105_100 Hb_000002_380--Hb_003108_020 Hb_154948_040 Hb_154948_040 Hb_000002_380--Hb_154948_040 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_000960_060 Hb_000960_060 Hb_005731_050--Hb_000960_060 Hb_004108_070 Hb_004108_070 Hb_005731_050--Hb_004108_070 Hb_000111_380 Hb_000111_380 Hb_005731_050--Hb_000111_380 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_033594_120 Hb_033594_120 Hb_005731_050--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_005731_050--Hb_003428_030 Hb_005054_350 Hb_005054_350 Hb_003435_020--Hb_005054_350 Hb_000172_320 Hb_000172_320 Hb_003435_020--Hb_000172_320 Hb_006693_020 Hb_006693_020 Hb_003435_020--Hb_006693_020 Hb_002078_140 Hb_002078_140 Hb_003435_020--Hb_002078_140 Hb_000059_370 Hb_000059_370 Hb_003435_020--Hb_000059_370 Hb_000431_170 Hb_000431_170 Hb_003435_020--Hb_000431_170 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_003108_020--Hb_000656_170 Hb_003108_020--Hb_004032_010 Hb_003502_090--Hb_000479_190 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_003502_090--Hb_154948_040 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_004032_010--Hb_000656_170 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.65621 3.45644 6.73819 14.3854 12.8253 11.719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74436 20.093 9.61968 7.1124 5.63378

CAGE analysis