Hb_031421_010

Information

Type -
Description -
Location Contig31421: 3683-7052
Sequence    

Annotation

kegg
ID rcu:RCOM_1682180
description superoxide dismutase copper chaperone, putative
nr
ID XP_012087054.1
description PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
swissprot
ID Q9LD47
description Copper chaperone for superoxide dismutase, chloroplastic/cytosolic OS=Arabidopsis thaliana GN=CCS PE=1 SV=1
trembl
ID A0A067JZY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20716 PE=4 SV=1
Gene Ontology
ID GO:0009570
description copper chaperone for superoxide chloroplastic cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33219: 3819-7426 , PASA_asmbl_33220: 4638-4873
cDNA
(Sanger)
(ID:Location)		 023_J20.ab1: 3822-6622

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031421_010 0.0 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
2 Hb_000099_160 0.1273347805 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
3 Hb_001347_060 0.1372541097 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_002333_060 0.1413463748 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_165928_040 0.1428843975 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
6 Hb_001936_090 0.1457602843 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
7 Hb_000025_270 0.146687416 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
8 Hb_114310_090 0.1506248871 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
9 Hb_018133_040 0.1507341709 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
10 Hb_155832_010 0.1510641794 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_011512_110 0.1522149571 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_029584_070 0.1538150421 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
13 Hb_001189_090 0.1545221436 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_001546_060 0.1553208935 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
15 Hb_071188_010 0.1559859151 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
16 Hb_002241_010 0.1571470672 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
17 Hb_000948_150 0.1572199655 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]
18 Hb_000906_100 0.1603514365 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
19 Hb_001243_040 0.1615905346 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
20 Hb_003020_030 0.1617493664 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_031421_010 Hb_031421_010 Hb_000099_160 Hb_000099_160 Hb_031421_010--Hb_000099_160 Hb_001347_060 Hb_001347_060 Hb_031421_010--Hb_001347_060 Hb_002333_060 Hb_002333_060 Hb_031421_010--Hb_002333_060 Hb_165928_040 Hb_165928_040 Hb_031421_010--Hb_165928_040 Hb_001936_090 Hb_001936_090 Hb_031421_010--Hb_001936_090 Hb_000025_270 Hb_000025_270 Hb_031421_010--Hb_000025_270 Hb_188281_040 Hb_188281_040 Hb_000099_160--Hb_188281_040 Hb_000099_160--Hb_001936_090 Hb_000720_050 Hb_000720_050 Hb_000099_160--Hb_000720_050 Hb_000099_160--Hb_001347_060 Hb_010294_010 Hb_010294_010 Hb_000099_160--Hb_010294_010 Hb_007765_100 Hb_007765_100 Hb_000099_160--Hb_007765_100 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001347_060--Hb_001936_090 Hb_000363_310 Hb_000363_310 Hb_001347_060--Hb_000363_310 Hb_000406_200 Hb_000406_200 Hb_001347_060--Hb_000406_200 Hb_011512_110 Hb_011512_110 Hb_002333_060--Hb_011512_110 Hb_002811_160 Hb_002811_160 Hb_002333_060--Hb_002811_160 Hb_022693_140 Hb_022693_140 Hb_002333_060--Hb_022693_140 Hb_012022_150 Hb_012022_150 Hb_002333_060--Hb_012022_150 Hb_071188_010 Hb_071188_010 Hb_002333_060--Hb_071188_010 Hb_003038_200 Hb_003038_200 Hb_002333_060--Hb_003038_200 Hb_000556_090 Hb_000556_090 Hb_165928_040--Hb_000556_090 Hb_000019_200 Hb_000019_200 Hb_165928_040--Hb_000019_200 Hb_000189_550 Hb_000189_550 Hb_165928_040--Hb_000189_550 Hb_011228_010 Hb_011228_010 Hb_165928_040--Hb_011228_010 Hb_002055_040 Hb_002055_040 Hb_165928_040--Hb_002055_040 Hb_165928_040--Hb_004108_160 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_003020_030 Hb_003020_030 Hb_000025_270--Hb_003020_030 Hb_007101_080 Hb_007101_080 Hb_000025_270--Hb_007101_080 Hb_004724_410 Hb_004724_410 Hb_000025_270--Hb_004724_410 Hb_001623_280 Hb_001623_280 Hb_000025_270--Hb_001623_280 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7975 35.7715 50.3737 32.7502 105.608 22.0608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.6666 55.0977 58.2402 50.1553 105.096

CAGE analysis