Hb_130192_030

Information

Type -
Description -
Location Contig130192: 20070-22592
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa020947mg
description hypothetical protein
nr
ID XP_012086394.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q9LTV8
description Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
trembl
ID A0A067K248
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22909 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at3g11460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130192_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_002701_040 0.0903246882 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
3 Hb_000318_390 0.1095919531 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
4 Hb_001967_030 0.1158738069 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
5 Hb_000928_300 0.1166310723 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
6 Hb_009851_070 0.1169553761 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
7 Hb_014267_010 0.1191024576 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
8 Hb_004228_020 0.1191413164 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
9 Hb_000599_190 0.1213684318 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
10 Hb_003906_160 0.1217230612 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
11 Hb_012656_030 0.1243924914 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
12 Hb_001104_190 0.1244141425 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
13 Hb_000453_060 0.1252327702 - - PREDICTED: pentatricopeptide repeat-containing protein At4g11690 [Jatropha curcas]
14 Hb_002170_050 0.1252768975 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Jatropha curcas]
15 Hb_000003_550 0.1273203097 - - -
16 Hb_000540_060 0.1276311309 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
17 Hb_001268_380 0.1284911125 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
18 Hb_002188_110 0.1286552718 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_025194_040 0.1300310663 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
20 Hb_000130_040 0.130748262 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_130192_030 Hb_130192_030 Hb_002701_040 Hb_002701_040 Hb_130192_030--Hb_002701_040 Hb_000318_390 Hb_000318_390 Hb_130192_030--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_130192_030--Hb_001967_030 Hb_000928_300 Hb_000928_300 Hb_130192_030--Hb_000928_300 Hb_009851_070 Hb_009851_070 Hb_130192_030--Hb_009851_070 Hb_014267_010 Hb_014267_010 Hb_130192_030--Hb_014267_010 Hb_002701_040--Hb_001967_030 Hb_006637_050 Hb_006637_050 Hb_002701_040--Hb_006637_050 Hb_004032_380 Hb_004032_380 Hb_002701_040--Hb_004032_380 Hb_000130_040 Hb_000130_040 Hb_002701_040--Hb_000130_040 Hb_003906_160 Hb_003906_160 Hb_002701_040--Hb_003906_160 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_000574_410 Hb_000574_410 Hb_000928_300--Hb_000574_410 Hb_002188_110 Hb_002188_110 Hb_000928_300--Hb_002188_110 Hb_000928_300--Hb_009851_070 Hb_003467_020 Hb_003467_020 Hb_000928_300--Hb_003467_020 Hb_008775_040 Hb_008775_040 Hb_000928_300--Hb_008775_040 Hb_008500_010 Hb_008500_010 Hb_000928_300--Hb_008500_010 Hb_000796_030 Hb_000796_030 Hb_009851_070--Hb_000796_030 Hb_000009_600 Hb_000009_600 Hb_009851_070--Hb_000009_600 Hb_002234_170 Hb_002234_170 Hb_009851_070--Hb_002234_170 Hb_000174_220 Hb_000174_220 Hb_009851_070--Hb_000174_220 Hb_009503_030 Hb_009503_030 Hb_009851_070--Hb_009503_030 Hb_003785_040 Hb_003785_040 Hb_009851_070--Hb_003785_040 Hb_014267_010--Hb_012656_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184606 0.537259 0.0786877 0.140292 0.413956 0.383419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11892 0.327508 0.29662 0.26652 0.363727

CAGE analysis