Hb_020437_020

Information

Type -
Description -
Location Contig20437: 22617-24467
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01410g
description hypothetical protein
nr
ID XP_006368301.1
description hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID U5GMT7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s01410g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20997: 23304-23981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020437_020 0.0 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
2 Hb_005470_030 0.1494135003 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_002284_220 0.1693876332 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
4 Hb_005167_020 0.1715504836 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_139848_010 0.1722617637 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
6 Hb_001863_020 0.1812915104 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
7 Hb_001437_280 0.1851748039 - - AMP dependent CoA ligase, putative [Ricinus communis]
8 Hb_069696_010 0.1927990889 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
9 Hb_000890_080 0.1992870651 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
10 Hb_000058_080 0.2038384656 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_000130_200 0.207122146 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
12 Hb_033312_080 0.2093833366 - - aldose-1-epimerase, putative [Ricinus communis]
13 Hb_000809_240 0.2149954703 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
14 Hb_003055_110 0.2153319586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000525_050 0.2168429382 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000866_050 0.2174040574 - - phosphate transporter [Manihot esculenta]
17 Hb_010422_070 0.2176484519 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
18 Hb_004586_160 0.2182310247 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
19 Hb_001399_010 0.2225430338 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000210_080 0.2227809379 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_020437_020 Hb_020437_020 Hb_005470_030 Hb_005470_030 Hb_020437_020--Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_020437_020--Hb_002284_220 Hb_005167_020 Hb_005167_020 Hb_020437_020--Hb_005167_020 Hb_139848_010 Hb_139848_010 Hb_020437_020--Hb_139848_010 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_001437_280 Hb_001437_280 Hb_020437_020--Hb_001437_280 Hb_005470_030--Hb_002284_220 Hb_000110_060 Hb_000110_060 Hb_005470_030--Hb_000110_060 Hb_000477_040 Hb_000477_040 Hb_005470_030--Hb_000477_040 Hb_002486_020 Hb_002486_020 Hb_005470_030--Hb_002486_020 Hb_000849_120 Hb_000849_120 Hb_005470_030--Hb_000849_120 Hb_002284_220--Hb_002486_020 Hb_002284_220--Hb_000110_060 Hb_033312_080 Hb_033312_080 Hb_002284_220--Hb_033312_080 Hb_000108_240 Hb_000108_240 Hb_002284_220--Hb_000108_240 Hb_010172_110 Hb_010172_110 Hb_002284_220--Hb_010172_110 Hb_010422_070 Hb_010422_070 Hb_005167_020--Hb_010422_070 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_004128_070 Hb_004128_070 Hb_005167_020--Hb_004128_070 Hb_000890_080 Hb_000890_080 Hb_139848_010--Hb_000890_080 Hb_002232_160 Hb_002232_160 Hb_139848_010--Hb_002232_160 Hb_004586_160 Hb_004586_160 Hb_139848_010--Hb_004586_160 Hb_007416_110 Hb_007416_110 Hb_139848_010--Hb_007416_110 Hb_003207_010 Hb_003207_010 Hb_139848_010--Hb_003207_010 Hb_001138_060 Hb_001138_060 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_001863_020--Hb_042202_060 Hb_007621_010 Hb_007621_010 Hb_001437_280--Hb_007621_010 Hb_000820_140 Hb_000820_140 Hb_001437_280--Hb_000820_140 Hb_000718_040 Hb_000718_040 Hb_001437_280--Hb_000718_040 Hb_003055_110 Hb_003055_110 Hb_001437_280--Hb_003055_110 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0789965 0.0526254 0.851916 0.540858 0 0.0212046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225819 0.213144 0.789185 0.598737 1.17012

CAGE analysis