Hb_000718_040

Information

Type -
Description -
Location Contig718: 95286-101541
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05750g
description POPTRDRAFT_823306; lipase family protein
nr
ID XP_012092976.1
description PREDICTED: lipase member N [Jatropha curcas]
swissprot
ID Q8K2A6
description Lipase member M OS=Mus musculus GN=Lipm PE=2 SV=1
trembl
ID A0A067JKT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05863 PE=4 SV=1
Gene Ontology
ID GO:0006629
description lipase member n

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55506: 97406-100124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000718_040 0.0 - - PREDICTED: lipase member N [Jatropha curcas]
2 Hb_000189_150 0.1320907307 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
3 Hb_002374_300 0.1498879111 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
4 Hb_000820_140 0.1524025475 - - histone H4 [Zea mays]
5 Hb_001322_230 0.1548116869 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
6 Hb_005489_090 0.1600062545 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
7 Hb_005917_020 0.1628855238 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
8 Hb_000991_020 0.1679456689 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000368_120 0.1680783565 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
10 Hb_000627_300 0.1712993818 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
11 Hb_000431_150 0.1716686229 - - ribosomal protein L27, putative [Ricinus communis]
12 Hb_000307_070 0.1735187766 - - protein kinase, putative [Ricinus communis]
13 Hb_001124_180 0.173786638 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
14 Hb_000032_140 0.1748710194 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023732_050 0.1766527643 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_011114_020 0.1767307802 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
17 Hb_000594_100 0.1768916536 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
18 Hb_169209_010 0.1786154584 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
19 Hb_001124_190 0.1792967555 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001711_120 0.1795213447 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000718_040 Hb_000718_040 Hb_000189_150 Hb_000189_150 Hb_000718_040--Hb_000189_150 Hb_002374_300 Hb_002374_300 Hb_000718_040--Hb_002374_300 Hb_000820_140 Hb_000820_140 Hb_000718_040--Hb_000820_140 Hb_001322_230 Hb_001322_230 Hb_000718_040--Hb_001322_230 Hb_005489_090 Hb_005489_090 Hb_000718_040--Hb_005489_090 Hb_005917_020 Hb_005917_020 Hb_000718_040--Hb_005917_020 Hb_000431_150 Hb_000431_150 Hb_000189_150--Hb_000431_150 Hb_000152_180 Hb_000152_180 Hb_000189_150--Hb_000152_180 Hb_011476_030 Hb_011476_030 Hb_000189_150--Hb_011476_030 Hb_000368_120 Hb_000368_120 Hb_000189_150--Hb_000368_120 Hb_011114_020 Hb_011114_020 Hb_000189_150--Hb_011114_020 Hb_001124_180 Hb_001124_180 Hb_002374_300--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_002374_300--Hb_000627_300 Hb_000176_010 Hb_000176_010 Hb_002374_300--Hb_000176_010 Hb_002374_300--Hb_005489_090 Hb_004128_070 Hb_004128_070 Hb_002374_300--Hb_004128_070 Hb_009780_050 Hb_009780_050 Hb_002374_300--Hb_009780_050 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070 Hb_005489_090--Hb_001124_180 Hb_003935_080 Hb_003935_080 Hb_005489_090--Hb_003935_080 Hb_000594_100 Hb_000594_100 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_003680_090 Hb_003680_090 Hb_005917_020--Hb_003680_090 Hb_004502_010 Hb_004502_010 Hb_005917_020--Hb_004502_010 Hb_005917_020--Hb_011114_020 Hb_005917_020--Hb_000307_070 Hb_001959_060 Hb_001959_060 Hb_005917_020--Hb_001959_060 Hb_002811_310 Hb_002811_310 Hb_005917_020--Hb_002811_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120238 0.753323 4.21872 0.922568 0.189257 0.0519964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52231 2.04344 1.0475 1.00742 4.10276

CAGE analysis