Hb_002486_060

Information

Type -
Description -
Location Contig2486: 48110-51394
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19190g
description POPTRDRAFT_822369; ferritin 2 precursor family protein
nr
ID KDP44711.1
description hypothetical protein JCGZ_01211 [Jatropha curcas]
swissprot
ID Q948P6
description Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1
trembl
ID A0A067L8G3
description Ferritin OS=Jatropha curcas GN=JCGZ_01211 PE=3 SV=1
Gene Ontology
ID GO:0009507
description ferritin- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25876: 48169-51387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_060 0.0 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
2 Hb_000620_020 0.1099074218 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
3 Hb_000331_570 0.1178561647 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
4 Hb_001390_100 0.1214466831 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
5 Hb_002627_040 0.1227612265 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_101334_020 0.1256557457 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
7 Hb_001143_100 0.1294532599 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
8 Hb_005527_060 0.1320922998 - - malic enzyme, putative [Ricinus communis]
9 Hb_000025_540 0.1339471159 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
10 Hb_001587_040 0.134407266 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
11 Hb_000307_070 0.1349705811 - - protein kinase, putative [Ricinus communis]
12 Hb_002871_040 0.1387765446 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
13 Hb_000116_250 0.1408232169 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
14 Hb_001863_180 0.1443579078 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
15 Hb_001307_100 0.1470285477 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_003529_040 0.1478720342 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000589_170 0.1482416269 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
18 Hb_002687_160 0.1492685513 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
19 Hb_000230_530 0.1498411131 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000310_060 0.1499173751 - - hypothetical protein JCGZ_20793 [Jatropha curcas]

Gene co-expression network

sample Hb_002486_060 Hb_002486_060 Hb_000620_020 Hb_000620_020 Hb_002486_060--Hb_000620_020 Hb_000331_570 Hb_000331_570 Hb_002486_060--Hb_000331_570 Hb_001390_100 Hb_001390_100 Hb_002486_060--Hb_001390_100 Hb_002627_040 Hb_002627_040 Hb_002486_060--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_002486_060--Hb_101334_020 Hb_001143_100 Hb_001143_100 Hb_002486_060--Hb_001143_100 Hb_002871_040 Hb_002871_040 Hb_000620_020--Hb_002871_040 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_000620_020--Hb_101334_020 Hb_002783_190 Hb_002783_190 Hb_000620_020--Hb_002783_190 Hb_006438_020 Hb_006438_020 Hb_000620_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_000620_020--Hb_007426_220 Hb_000331_420 Hb_000331_420 Hb_000331_570--Hb_000331_420 Hb_000331_570--Hb_002871_040 Hb_000331_570--Hb_002627_040 Hb_000331_570--Hb_101334_020 Hb_000331_570--Hb_001390_100 Hb_070624_010 Hb_070624_010 Hb_000331_570--Hb_070624_010 Hb_001390_100--Hb_101334_020 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_000496_130 Hb_000496_130 Hb_001390_100--Hb_000496_130 Hb_138585_030 Hb_138585_030 Hb_001390_100--Hb_138585_030 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002687_160 Hb_002687_160 Hb_002627_040--Hb_002687_160 Hb_000025_540 Hb_000025_540 Hb_002627_040--Hb_000025_540 Hb_002627_040--Hb_138585_030 Hb_002627_040--Hb_070624_010 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_017193_010 Hb_017193_010 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_001143_100--Hb_000496_130 Hb_000579_040 Hb_000579_040 Hb_001143_100--Hb_000579_040 Hb_000510_190 Hb_000510_190 Hb_001143_100--Hb_000510_190 Hb_032631_070 Hb_032631_070 Hb_001143_100--Hb_032631_070 Hb_003355_010 Hb_003355_010 Hb_001143_100--Hb_003355_010 Hb_008375_010 Hb_008375_010 Hb_001143_100--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26185 22.9493 92.3489 35.8937 5.16697 12.5451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4855 9.77837 25.6772 35.7618 64.4505

CAGE analysis