Hb_000705_270

Information

Type -
Description -
Location Contig705: 150442-150720
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04230g
description hypothetical protein
nr
ID XP_011032226.1
description PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PDE4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04230g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55087: 150415-150989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_270 0.0 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
2 Hb_000035_020 0.1834180274 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
3 Hb_000975_170 0.1977119578 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
4 Hb_001221_240 0.2033504639 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000392_530 0.2075061305 - - hypothetical protein PHAVU_003G0695001g, partial [Phaseolus vulgaris]
6 Hb_159308_020 0.2129460798 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
7 Hb_000226_120 0.213299664 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
8 Hb_005976_010 0.2136989832 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
9 Hb_001213_110 0.2185312486 - - SOUL heme-binding family protein [Populus trichocarpa]
10 Hb_001033_070 0.2194529841 - - seryl-tRNA synthetase, putative [Ricinus communis]
11 Hb_057556_010 0.2213833335 - - Light-regulated protein precursor, putative [Ricinus communis]
12 Hb_000115_250 0.2273601184 - - PREDICTED: endonuclease 2 [Jatropha curcas]
13 Hb_002400_300 0.230840822 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
14 Hb_000300_410 0.2309287931 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
15 Hb_118034_010 0.2316668846 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
16 Hb_000580_110 0.2356270248 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
17 Hb_132840_070 0.2368274501 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
18 Hb_182424_020 0.2376439934 - - hypothetical protein POPTR_0006s24190g [Populus trichocarpa]
19 Hb_000417_220 0.23893513 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
20 Hb_000077_360 0.2391780406 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000705_270 Hb_000705_270 Hb_000035_020 Hb_000035_020 Hb_000705_270--Hb_000035_020 Hb_000975_170 Hb_000975_170 Hb_000705_270--Hb_000975_170 Hb_001221_240 Hb_001221_240 Hb_000705_270--Hb_001221_240 Hb_000392_530 Hb_000392_530 Hb_000705_270--Hb_000392_530 Hb_159308_020 Hb_159308_020 Hb_000705_270--Hb_159308_020 Hb_000226_120 Hb_000226_120 Hb_000705_270--Hb_000226_120 Hb_134813_010 Hb_134813_010 Hb_000035_020--Hb_134813_010 Hb_021313_010 Hb_021313_010 Hb_000035_020--Hb_021313_010 Hb_031330_020 Hb_031330_020 Hb_000035_020--Hb_031330_020 Hb_000683_080 Hb_000683_080 Hb_000035_020--Hb_000683_080 Hb_000300_680 Hb_000300_680 Hb_000035_020--Hb_000300_680 Hb_011053_020 Hb_011053_020 Hb_000035_020--Hb_011053_020 Hb_002400_300 Hb_002400_300 Hb_000975_170--Hb_002400_300 Hb_182424_020 Hb_182424_020 Hb_000975_170--Hb_182424_020 Hb_000309_070 Hb_000309_070 Hb_000975_170--Hb_000309_070 Hb_114917_010 Hb_114917_010 Hb_000975_170--Hb_114917_010 Hb_000975_170--Hb_001221_240 Hb_000975_170--Hb_031330_020 Hb_042463_010 Hb_042463_010 Hb_001221_240--Hb_042463_010 Hb_001221_240--Hb_159308_020 Hb_000552_010 Hb_000552_010 Hb_001221_240--Hb_000552_010 Hb_001221_240--Hb_002400_300 Hb_001832_170 Hb_001832_170 Hb_001221_240--Hb_001832_170 Hb_000442_120 Hb_000442_120 Hb_000392_530--Hb_000442_120 Hb_094437_030 Hb_094437_030 Hb_000392_530--Hb_094437_030 Hb_057556_010 Hb_057556_010 Hb_000392_530--Hb_057556_010 Hb_012077_010 Hb_012077_010 Hb_000392_530--Hb_012077_010 Hb_000392_540 Hb_000392_540 Hb_000392_530--Hb_000392_540 Hb_159308_020--Hb_000975_170 Hb_159308_020--Hb_182424_020 Hb_159308_020--Hb_000035_020 Hb_005092_070 Hb_005092_070 Hb_159308_020--Hb_005092_070 Hb_025161_030 Hb_025161_030 Hb_159308_020--Hb_025161_030 Hb_000236_230 Hb_000236_230 Hb_000226_120--Hb_000236_230 Hb_017358_080 Hb_017358_080 Hb_000226_120--Hb_017358_080 Hb_147745_010 Hb_147745_010 Hb_000226_120--Hb_147745_010 Hb_001366_110 Hb_001366_110 Hb_000226_120--Hb_001366_110 Hb_000428_040 Hb_000428_040 Hb_000226_120--Hb_000428_040 Hb_000165_020 Hb_000165_020 Hb_000226_120--Hb_000165_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.771685 3.18582 1.57227 91.3121 0.764943 1.51223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60782 8.22525 14.1614 26.6881 108.727

CAGE analysis