Hb_012077_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12077: 11805-17708
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012077_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_006755_030 0.1201037416 - - BURP domain-containing protein, putative [Theobroma cacao]
3 Hb_003688_120 0.1260600915 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
4 Hb_005207_040 0.1273690471 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
5 Hb_000959_110 0.1290412952 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
6 Hb_014102_010 0.1329818976 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_001396_130 0.1360807391 - - conserved hypothetical protein [Ricinus communis]
8 Hb_169960_010 0.1416549088 - - -
9 Hb_090390_010 0.1443064024 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
10 Hb_044380_010 0.1446356652 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
11 Hb_002559_020 0.1491894076 transcription factor TF Family: TUB -
12 Hb_094437_030 0.1494019978 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
13 Hb_184074_010 0.1513079515 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
14 Hb_004930_020 0.1541787688 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
15 Hb_186765_010 0.1559043739 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
16 Hb_000377_130 0.1560876322 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
17 Hb_000649_090 0.1578434428 - - unnamed protein product [Vitis vinifera]
18 Hb_011519_040 0.1585807858 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
19 Hb_007295_020 0.1629816148 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
20 Hb_000806_010 0.1668752113 - - PREDICTED: hevamine-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_012077_010 Hb_012077_010 Hb_006755_030 Hb_006755_030 Hb_012077_010--Hb_006755_030 Hb_003688_120 Hb_003688_120 Hb_012077_010--Hb_003688_120 Hb_005207_040 Hb_005207_040 Hb_012077_010--Hb_005207_040 Hb_000959_110 Hb_000959_110 Hb_012077_010--Hb_000959_110 Hb_014102_010 Hb_014102_010 Hb_012077_010--Hb_014102_010 Hb_001396_130 Hb_001396_130 Hb_012077_010--Hb_001396_130 Hb_000377_130 Hb_000377_130 Hb_006755_030--Hb_000377_130 Hb_006755_030--Hb_000959_110 Hb_011519_040 Hb_011519_040 Hb_006755_030--Hb_011519_040 Hb_186765_010 Hb_186765_010 Hb_006755_030--Hb_186765_010 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030 Hb_003688_120--Hb_014102_010 Hb_003688_120--Hb_005207_040 Hb_000649_090 Hb_000649_090 Hb_003688_120--Hb_000649_090 Hb_000806_010 Hb_000806_010 Hb_003688_120--Hb_000806_010 Hb_169960_010 Hb_169960_010 Hb_003688_120--Hb_169960_010 Hb_002559_020 Hb_002559_020 Hb_003688_120--Hb_002559_020 Hb_005207_040--Hb_002559_020 Hb_005207_040--Hb_014102_010 Hb_060783_010 Hb_060783_010 Hb_005207_040--Hb_060783_010 Hb_005207_040--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_005207_040--Hb_001144_030 Hb_004930_020 Hb_004930_020 Hb_000959_110--Hb_004930_020 Hb_000959_110--Hb_184074_010 Hb_000959_110--Hb_000334_030 Hb_000959_110--Hb_000377_130 Hb_000959_110--Hb_186765_010 Hb_014102_010--Hb_000806_010 Hb_014102_010--Hb_000649_090 Hb_014102_010--Hb_169960_010 Hb_014102_010--Hb_002559_020 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_001396_130--Hb_000377_130 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101711 0 1.59183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.377921 1.40652

CAGE analysis