Hb_000392_530

Information

Type -
Description -
Location Contig392: 398934-399314
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G0695001
description hypothetical protein
nr
ID XP_007153844.1
description hypothetical protein PHAVU_003G0695001g, partial [Phaseolus vulgaris]
swissprot
ID Q9FM19
description Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1
trembl
ID V7C900
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_003G0695001g PE=4 SV=1
Gene Ontology
ID GO:0016020
description hypersensitive-induced response protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_530 0.0 - - hypothetical protein PHAVU_003G0695001g, partial [Phaseolus vulgaris]
2 Hb_000442_120 0.1762127647 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000705_270 0.2075061305 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
4 Hb_094437_030 0.2442856639 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_057556_010 0.2566761008 - - Light-regulated protein precursor, putative [Ricinus communis]
6 Hb_012077_010 0.2574969276 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_000392_540 0.2576296955 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
8 Hb_027472_190 0.258321205 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001221_240 0.2613781382 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000226_120 0.2684932881 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_010968_030 0.2759207696 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
12 Hb_033683_020 0.2760907291 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
13 Hb_001195_380 0.2779038026 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
14 Hb_001235_120 0.2779440879 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
15 Hb_007295_020 0.2819241661 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
16 Hb_000260_740 0.2820947547 - - -
17 Hb_016564_050 0.282754999 - - -
18 Hb_001269_580 0.2832706397 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
19 Hb_090390_010 0.2838685146 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
20 Hb_001546_010 0.2841015833 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000392_530 Hb_000392_530 Hb_000442_120 Hb_000442_120 Hb_000392_530--Hb_000442_120 Hb_000705_270 Hb_000705_270 Hb_000392_530--Hb_000705_270 Hb_094437_030 Hb_094437_030 Hb_000392_530--Hb_094437_030 Hb_057556_010 Hb_057556_010 Hb_000392_530--Hb_057556_010 Hb_012077_010 Hb_012077_010 Hb_000392_530--Hb_012077_010 Hb_000392_540 Hb_000392_540 Hb_000392_530--Hb_000392_540 Hb_002909_110 Hb_002909_110 Hb_000442_120--Hb_002909_110 Hb_000094_200 Hb_000094_200 Hb_000442_120--Hb_000094_200 Hb_001486_350 Hb_001486_350 Hb_000442_120--Hb_001486_350 Hb_001269_580 Hb_001269_580 Hb_000442_120--Hb_001269_580 Hb_002110_290 Hb_002110_290 Hb_000442_120--Hb_002110_290 Hb_000035_020 Hb_000035_020 Hb_000705_270--Hb_000035_020 Hb_000975_170 Hb_000975_170 Hb_000705_270--Hb_000975_170 Hb_001221_240 Hb_001221_240 Hb_000705_270--Hb_001221_240 Hb_159308_020 Hb_159308_020 Hb_000705_270--Hb_159308_020 Hb_000226_120 Hb_000226_120 Hb_000705_270--Hb_000226_120 Hb_027472_190 Hb_027472_190 Hb_094437_030--Hb_027472_190 Hb_090390_010 Hb_090390_010 Hb_094437_030--Hb_090390_010 Hb_000392_490 Hb_000392_490 Hb_094437_030--Hb_000392_490 Hb_001396_130 Hb_001396_130 Hb_094437_030--Hb_001396_130 Hb_000309_070 Hb_000309_070 Hb_094437_030--Hb_000309_070 Hb_003714_030 Hb_003714_030 Hb_094437_030--Hb_003714_030 Hb_001621_100 Hb_001621_100 Hb_057556_010--Hb_001621_100 Hb_001546_010 Hb_001546_010 Hb_057556_010--Hb_001546_010 Hb_008695_220 Hb_008695_220 Hb_057556_010--Hb_008695_220 Hb_000950_030 Hb_000950_030 Hb_057556_010--Hb_000950_030 Hb_000580_110 Hb_000580_110 Hb_057556_010--Hb_000580_110 Hb_000417_400 Hb_000417_400 Hb_057556_010--Hb_000417_400 Hb_006755_030 Hb_006755_030 Hb_012077_010--Hb_006755_030 Hb_003688_120 Hb_003688_120 Hb_012077_010--Hb_003688_120 Hb_005207_040 Hb_005207_040 Hb_012077_010--Hb_005207_040 Hb_000959_110 Hb_000959_110 Hb_012077_010--Hb_000959_110 Hb_014102_010 Hb_014102_010 Hb_012077_010--Hb_014102_010 Hb_012077_010--Hb_001396_130 Hb_010968_030 Hb_010968_030 Hb_000392_540--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000392_540--Hb_011224_150 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000367_080 Hb_000367_080 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42053 0 13.8409 0 0.56928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99117 0 0.922402 4.12848 12.5975

CAGE analysis