Hb_000367_080

Information

Type -
Description -
Location Contig367: 90295-91737
Sequence    

Annotation

kegg
ID tcc:TCM_014167
description UDP-glucose 6-dehydrogenase family protein isoform 1
nr
ID XP_012080355.1
description PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
swissprot
ID Q96558
description UDP-glucose 6-dehydrogenase 1 OS=Glycine max GN=UGD1 PE=2 SV=1
trembl
ID A0A067KGE2
description UDP-glucose 6-dehydrogenase OS=Jatropha curcas GN=JCGZ_11696 PE=3 SV=1
Gene Ontology
ID GO:0003979
description udp-glucose 6-dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37733: 90381-90478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_080 0.0 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
2 Hb_000928_200 0.1077496308 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
3 Hb_000392_540 0.1101460466 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
4 Hb_010968_030 0.1150247284 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
5 Hb_011224_150 0.1196423531 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
6 Hb_000856_030 0.1237701794 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000251_120 0.1259008769 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_002759_030 0.1390930365 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
9 Hb_000457_120 0.1433908501 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
10 Hb_000152_520 0.1436240556 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
11 Hb_000317_170 0.1447844412 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_001001_070 0.1497284574 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
13 Hb_000368_040 0.1499468764 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005305_040 0.1503549182 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
15 Hb_001235_120 0.1506165244 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
16 Hb_005539_140 0.1513597695 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
17 Hb_000009_250 0.1577796661 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_058471_010 0.1593194794 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
19 Hb_000780_180 0.1601826807 - - PREDICTED: uncharacterized protein LOC105641547 [Jatropha curcas]
20 Hb_003086_030 0.1607196174 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_080 Hb_000367_080 Hb_000928_200 Hb_000928_200 Hb_000367_080--Hb_000928_200 Hb_000392_540 Hb_000392_540 Hb_000367_080--Hb_000392_540 Hb_010968_030 Hb_010968_030 Hb_000367_080--Hb_010968_030 Hb_011224_150 Hb_011224_150 Hb_000367_080--Hb_011224_150 Hb_000856_030 Hb_000856_030 Hb_000367_080--Hb_000856_030 Hb_000251_120 Hb_000251_120 Hb_000367_080--Hb_000251_120 Hb_000457_120 Hb_000457_120 Hb_000928_200--Hb_000457_120 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_000392_540--Hb_010968_030 Hb_000392_540--Hb_011224_150 Hb_000392_540--Hb_000251_120 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110 Hb_009222_080 Hb_009222_080 Hb_010968_030--Hb_009222_080 Hb_001008_080 Hb_001008_080 Hb_010968_030--Hb_001008_080 Hb_010968_030--Hb_011224_150 Hb_001195_380 Hb_001195_380 Hb_010968_030--Hb_001195_380 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_011224_150--Hb_002890_110 Hb_011224_150--Hb_000856_030 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000856_030--Hb_000317_170 Hb_001680_050 Hb_001680_050 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_001001_070 Hb_001001_070 Hb_000251_120--Hb_001001_070 Hb_000108_180 Hb_000108_180 Hb_000251_120--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_000251_120--Hb_001195_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.415207 13.5712 5.10231 62.5038 0.251897 0.505363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.816443 1.51584 2.94001 3.85809 35.7913

CAGE analysis