Hb_000094_200

Information

Type -
Description -
Location Contig94: 173892-176011
Sequence    

Annotation

kegg
ID rcu:RCOM_1594110
description hypothetical protein
nr
ID XP_002510372.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IQJ6
description Protein LIKE COV 3 OS=Arabidopsis thaliana GN=LCV3 PE=2 SV=1
trembl
ID B9R7S9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63102: 170712-172976 , PASA_asmbl_63104: 173950-175950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003894_020 0.1792652524 - - plant sec1, putative [Ricinus communis]
3 Hb_004055_020 0.1850379908 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
4 Hb_020805_140 0.193667119 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
5 Hb_003304_110 0.1971957821 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000442_120 0.1997523896 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008695_220 0.2053478029 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
8 Hb_001486_350 0.2088460177 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_001989_100 0.2101181989 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
10 Hb_026527_010 0.2119433008 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
11 Hb_000950_030 0.2125586629 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
12 Hb_000226_120 0.2176998972 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
13 Hb_012707_010 0.2179287647 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
14 Hb_007416_100 0.2219295882 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
15 Hb_000345_080 0.230115723 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
16 Hb_000217_010 0.2326873166 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
17 Hb_000107_350 0.2338564224 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
18 Hb_000696_070 0.2342748097 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
19 Hb_001635_010 0.2352225631 - - -
20 Hb_001922_030 0.2358619892 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_200 Hb_000094_200 Hb_003894_020 Hb_003894_020 Hb_000094_200--Hb_003894_020 Hb_004055_020 Hb_004055_020 Hb_000094_200--Hb_004055_020 Hb_020805_140 Hb_020805_140 Hb_000094_200--Hb_020805_140 Hb_003304_110 Hb_003304_110 Hb_000094_200--Hb_003304_110 Hb_000442_120 Hb_000442_120 Hb_000094_200--Hb_000442_120 Hb_008695_220 Hb_008695_220 Hb_000094_200--Hb_008695_220 Hb_000455_070 Hb_000455_070 Hb_003894_020--Hb_000455_070 Hb_122636_010 Hb_122636_010 Hb_003894_020--Hb_122636_010 Hb_001999_100 Hb_001999_100 Hb_003894_020--Hb_001999_100 Hb_000796_020 Hb_000796_020 Hb_003894_020--Hb_000796_020 Hb_004162_060 Hb_004162_060 Hb_003894_020--Hb_004162_060 Hb_000950_030 Hb_000950_030 Hb_004055_020--Hb_000950_030 Hb_002157_270 Hb_002157_270 Hb_004055_020--Hb_002157_270 Hb_000107_350 Hb_000107_350 Hb_004055_020--Hb_000107_350 Hb_000806_130 Hb_000806_130 Hb_004055_020--Hb_000806_130 Hb_026527_010 Hb_026527_010 Hb_004055_020--Hb_026527_010 Hb_000077_100 Hb_000077_100 Hb_004055_020--Hb_000077_100 Hb_020805_140--Hb_026527_010 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_000192_020 Hb_000192_020 Hb_003304_110--Hb_000192_020 Hb_003304_110--Hb_000345_080 Hb_003304_110--Hb_020805_140 Hb_000438_120 Hb_000438_120 Hb_003304_110--Hb_000438_120 Hb_003304_110--Hb_000107_350 Hb_000392_530 Hb_000392_530 Hb_000442_120--Hb_000392_530 Hb_002909_110 Hb_002909_110 Hb_000442_120--Hb_002909_110 Hb_001486_350 Hb_001486_350 Hb_000442_120--Hb_001486_350 Hb_001269_580 Hb_001269_580 Hb_000442_120--Hb_001269_580 Hb_002110_290 Hb_002110_290 Hb_000442_120--Hb_002110_290 Hb_007574_040 Hb_007574_040 Hb_008695_220--Hb_007574_040 Hb_008695_220--Hb_000950_030 Hb_017002_010 Hb_017002_010 Hb_008695_220--Hb_017002_010 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_008695_220--Hb_000455_070 Hb_014720_100 Hb_014720_100 Hb_008695_220--Hb_014720_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0281586 0.130987 1.23769 0 0.0493432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256744 0.0504719 0.183217 0.163224 0.406762

CAGE analysis