Hb_011386_030

Information

Type -
Description -
Location Contig11386: 21458-24448
Sequence    

Annotation

kegg
ID rcu:RCOM_1402810
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012078589.1
description PREDICTED: probable protein phosphatase 2C 26 [Jatropha curcas]
swissprot
ID O64730
description Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170 PE=2 SV=2
trembl
ID A0A067LBB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17353 PE=4 SV=1
Gene Ontology
ID GO:0009570
description probable protein phosphatase 2c 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04159: 21489-24434 , PASA_asmbl_04160: 23139-24409 , PASA_asmbl_04161: 21648-22434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011386_030 0.0 - - PREDICTED: probable protein phosphatase 2C 26 [Jatropha curcas]
2 Hb_016219_030 0.1121705078 - - cytochrome P450, putative [Ricinus communis]
3 Hb_048093_010 0.1124404103 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
4 Hb_001105_040 0.1249484481 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000480_040 0.1257565043 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
6 Hb_025194_050 0.1274749166 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
7 Hb_000108_020 0.1279698973 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
8 Hb_000189_450 0.1301060103 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
9 Hb_000309_020 0.1304736062 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
10 Hb_000941_100 0.1306915217 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
11 Hb_000029_110 0.1308501822 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000816_200 0.1308780103 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_000291_180 0.132393499 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
14 Hb_174865_040 0.1328426698 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
15 Hb_000336_200 0.1328999865 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_005276_010 0.1346601798 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
17 Hb_000032_500 0.1353995195 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
18 Hb_000200_350 0.1366093961 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
19 Hb_042083_040 0.1369677161 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006006_060 0.1370217753 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011386_030 Hb_011386_030 Hb_016219_030 Hb_016219_030 Hb_011386_030--Hb_016219_030 Hb_048093_010 Hb_048093_010 Hb_011386_030--Hb_048093_010 Hb_001105_040 Hb_001105_040 Hb_011386_030--Hb_001105_040 Hb_000480_040 Hb_000480_040 Hb_011386_030--Hb_000480_040 Hb_025194_050 Hb_025194_050 Hb_011386_030--Hb_025194_050 Hb_000108_020 Hb_000108_020 Hb_011386_030--Hb_000108_020 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_002053_010 Hb_002053_010 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_016219_030--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_048093_010--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_048093_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_048093_010--Hb_012150_030 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180 Hb_134849_010 Hb_134849_010 Hb_048093_010--Hb_134849_010 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_001105_040--Hb_025194_050 Hb_001105_040--Hb_000032_500 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000480_040--Hb_000108_020 Hb_000617_250 Hb_000617_250 Hb_025194_050--Hb_000617_250 Hb_000270_480 Hb_000270_480 Hb_025194_050--Hb_000270_480 Hb_025194_050--Hb_001832_200 Hb_007012_030 Hb_007012_030 Hb_025194_050--Hb_007012_030 Hb_068079_010 Hb_068079_010 Hb_025194_050--Hb_068079_010 Hb_000108_020--Hb_068079_010 Hb_000108_020--Hb_000085_070 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51908 1.67894 5.99192 5.97 1.69148 2.8404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53536 1.78376 0.920358 2.07863 10.2376

CAGE analysis