Hb_012650_010

Information

Type -
Description -
Location Contig12650: 18144-22802
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012650_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_008727_130 0.1962434021 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
3 Hb_002456_020 0.235291631 - - Ankyrin repeat family protein [Theobroma cacao]
4 Hb_020411_010 0.3193233376 - - phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_016834_010 0.3195631339 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_012253_020 0.3255716977 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000659_090 0.3259104806 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_006237_030 0.3266926 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_002123_030 0.329755076 - - hypothetical protein VITISV_003767 [Vitis vinifera]
10 Hb_092855_030 0.3304729649 - - -
11 Hb_002518_110 0.3310498976 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
12 Hb_034359_010 0.3362515647 - - -
13 Hb_004244_010 0.3384447696 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
14 Hb_001832_100 0.3436572957 - - -
15 Hb_001031_050 0.3478940079 - - -
16 Hb_007718_020 0.3496336953 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
17 Hb_002311_270 0.3544833474 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
18 Hb_030370_010 0.3560003852 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
19 Hb_095937_010 0.3611529686 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_153665_010 0.3612323175 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_012650_010 Hb_012650_010 Hb_008727_130 Hb_008727_130 Hb_012650_010--Hb_008727_130 Hb_002456_020 Hb_002456_020 Hb_012650_010--Hb_002456_020 Hb_020411_010 Hb_020411_010 Hb_012650_010--Hb_020411_010 Hb_016834_010 Hb_016834_010 Hb_012650_010--Hb_016834_010 Hb_012253_020 Hb_012253_020 Hb_012650_010--Hb_012253_020 Hb_000659_090 Hb_000659_090 Hb_012650_010--Hb_000659_090 Hb_008727_130--Hb_012253_020 Hb_002123_030 Hb_002123_030 Hb_008727_130--Hb_002123_030 Hb_153665_010 Hb_153665_010 Hb_008727_130--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_008727_130--Hb_030370_010 Hb_000599_070 Hb_000599_070 Hb_008727_130--Hb_000599_070 Hb_002311_270 Hb_002311_270 Hb_002456_020--Hb_002311_270 Hb_001652_070 Hb_001652_070 Hb_002456_020--Hb_001652_070 Hb_002456_020--Hb_016834_010 Hb_000117_150 Hb_000117_150 Hb_002456_020--Hb_000117_150 Hb_001832_100 Hb_001832_100 Hb_002456_020--Hb_001832_100 Hb_020411_010--Hb_016834_010 Hb_092650_010 Hb_092650_010 Hb_020411_010--Hb_092650_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_001496_140 Hb_001496_140 Hb_020411_010--Hb_001496_140 Hb_076226_010 Hb_076226_010 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_016834_010--Hb_001496_140 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_012253_020--Hb_002123_030 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_030370_010 Hb_012253_020--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_006237_030 Hb_006237_030 Hb_000659_090--Hb_006237_030 Hb_095937_010 Hb_095937_010 Hb_000659_090--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_000659_090--Hb_145620_010 Hb_000421_280 Hb_000421_280 Hb_000659_090--Hb_000421_280 Hb_007975_020 Hb_007975_020 Hb_000659_090--Hb_007975_020 Hb_000811_090 Hb_000811_090 Hb_000659_090--Hb_000811_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00547957 0 0 0.00325158 0 0.0119305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00938973 0.0169553

CAGE analysis