Hb_001832_100

Information

Type -
Description -
Location Contig1832: 85152-91785
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_100 0.0 - - -
2 Hb_002456_020 0.2721923492 - - Ankyrin repeat family protein [Theobroma cacao]
3 Hb_002311_270 0.2949033154 - - PREDICTED: WD repeat-containing protein 43-like [Malus domestica]
4 Hb_033555_010 0.3087952435 - - -
5 Hb_044380_020 0.3177550808 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_001652_070 0.3204573462 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
7 Hb_000117_150 0.3257179132 - - hypothetical protein RCOM_0079810 [Ricinus communis]
8 Hb_016834_010 0.3299862062 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_001102_120 0.3311796976 - - -
10 Hb_000875_070 0.3315768936 - - -
11 Hb_169586_010 0.3326725901 - - Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Theobroma cacao]
12 Hb_001652_030 0.3349308637 - - hypothetical protein CISIN_1g019718mg [Citrus sinensis]
13 Hb_010068_050 0.3356647396 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
14 Hb_012633_030 0.3370908689 - - hypothetical protein RCOM_0452240 [Ricinus communis]
15 Hb_002255_080 0.3382953602 - - -
16 Hb_001146_050 0.3419705089 - - -
17 Hb_007718_020 0.3429681749 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
18 Hb_012650_010 0.3436572957 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_111868_010 0.3463023748 - - hypothetical protein CICLE_v10029531mg [Citrus clementina]
20 Hb_104835_010 0.3468773651 - - PREDICTED: probable protein Pop3 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_100 Hb_001832_100 Hb_002456_020 Hb_002456_020 Hb_001832_100--Hb_002456_020 Hb_002311_270 Hb_002311_270 Hb_001832_100--Hb_002311_270 Hb_033555_010 Hb_033555_010 Hb_001832_100--Hb_033555_010 Hb_044380_020 Hb_044380_020 Hb_001832_100--Hb_044380_020 Hb_001652_070 Hb_001652_070 Hb_001832_100--Hb_001652_070 Hb_000117_150 Hb_000117_150 Hb_001832_100--Hb_000117_150 Hb_002456_020--Hb_002311_270 Hb_012650_010 Hb_012650_010 Hb_002456_020--Hb_012650_010 Hb_002456_020--Hb_001652_070 Hb_016834_010 Hb_016834_010 Hb_002456_020--Hb_016834_010 Hb_002456_020--Hb_000117_150 Hb_012633_030 Hb_012633_030 Hb_002311_270--Hb_012633_030 Hb_002311_270--Hb_000117_150 Hb_005288_060 Hb_005288_060 Hb_002311_270--Hb_005288_060 Hb_001971_050 Hb_001971_050 Hb_002311_270--Hb_001971_050 Hb_002874_030 Hb_002874_030 Hb_002311_270--Hb_002874_030 Hb_000098_200 Hb_000098_200 Hb_033555_010--Hb_000098_200 Hb_169586_010 Hb_169586_010 Hb_033555_010--Hb_169586_010 Hb_007718_020 Hb_007718_020 Hb_033555_010--Hb_007718_020 Hb_002477_040 Hb_002477_040 Hb_033555_010--Hb_002477_040 Hb_000735_170 Hb_000735_170 Hb_033555_010--Hb_000735_170 Hb_004602_020 Hb_004602_020 Hb_033555_010--Hb_004602_020 Hb_001086_030 Hb_001086_030 Hb_044380_020--Hb_001086_030 Hb_000875_070 Hb_000875_070 Hb_044380_020--Hb_000875_070 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_006452_240 Hb_006452_240 Hb_044380_020--Hb_006452_240 Hb_003938_110 Hb_003938_110 Hb_044380_020--Hb_003938_110 Hb_000414_180 Hb_000414_180 Hb_044380_020--Hb_000414_180 Hb_002639_010 Hb_002639_010 Hb_001652_070--Hb_002639_010 Hb_002255_080 Hb_002255_080 Hb_001652_070--Hb_002255_080 Hb_001341_190 Hb_001341_190 Hb_001652_070--Hb_001341_190 Hb_001652_070--Hb_000117_150 Hb_022819_010 Hb_022819_010 Hb_001652_070--Hb_022819_010 Hb_016835_020 Hb_016835_020 Hb_000117_150--Hb_016835_020 Hb_025668_020 Hb_025668_020 Hb_000117_150--Hb_025668_020 Hb_000009_430 Hb_000009_430 Hb_000117_150--Hb_000009_430 Hb_000117_150--Hb_002255_080 Hb_001597_090 Hb_001597_090 Hb_000117_150--Hb_001597_090 Hb_104835_010 Hb_104835_010 Hb_000117_150--Hb_104835_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0199368 0 0 0.0380056 0.0160475 0.0140571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0804519 0.0597467

CAGE analysis