Hb_099990_010

Information

Type -
Description -
Location Contig99990: 9824-12148
Sequence    

Annotation

kegg
ID vvi:100259467
description DNA-directed RNA polymerases II, IV and V subunit 11
nr
ID XP_002285578.1
description PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
swissprot
ID Q38859
description DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1
trembl
ID D7SV69
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06990 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna-directed rna polymerases iv and v subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099990_010 0.0 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
2 Hb_000216_030 0.2590348273 - - aldehyde oxidase, putative [Ricinus communis]
3 Hb_001008_180 0.2692635973 - - -
4 Hb_022276_020 0.2693684406 - - -
5 Hb_000115_010 0.2730324296 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_000820_050 0.2768542656 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
7 Hb_000783_030 0.2787301726 - - tfiif-alpha, putative [Ricinus communis]
8 Hb_044005_010 0.2806161695 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
9 Hb_001006_240 0.2893143741 - - -
10 Hb_001304_120 0.2893678584 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
11 Hb_006268_020 0.30245409 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
12 Hb_000022_140 0.3033630495 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
13 Hb_000950_010 0.3051842312 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
14 Hb_018609_030 0.30541055 - - conserved hypothetical protein [Ricinus communis]
15 Hb_183443_010 0.3085201668 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_000820_060 0.3087506986 - - -
17 Hb_020763_010 0.3104040329 - - polyamine oxidase, putative [Ricinus communis]
18 Hb_003781_010 0.3115302929 - - PREDICTED: histone H2AX [Eucalyptus grandis]
19 Hb_174473_010 0.3117697536 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
20 Hb_013691_050 0.3141574168 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_099990_010 Hb_099990_010 Hb_000216_030 Hb_000216_030 Hb_099990_010--Hb_000216_030 Hb_001008_180 Hb_001008_180 Hb_099990_010--Hb_001008_180 Hb_022276_020 Hb_022276_020 Hb_099990_010--Hb_022276_020 Hb_000115_010 Hb_000115_010 Hb_099990_010--Hb_000115_010 Hb_000820_050 Hb_000820_050 Hb_099990_010--Hb_000820_050 Hb_000783_030 Hb_000783_030 Hb_099990_010--Hb_000783_030 Hb_006916_190 Hb_006916_190 Hb_000216_030--Hb_006916_190 Hb_044380_020 Hb_044380_020 Hb_000216_030--Hb_044380_020 Hb_001086_030 Hb_001086_030 Hb_000216_030--Hb_001086_030 Hb_003517_010 Hb_003517_010 Hb_000216_030--Hb_003517_010 Hb_008749_090 Hb_008749_090 Hb_000216_030--Hb_008749_090 Hb_001123_010 Hb_001123_010 Hb_000216_030--Hb_001123_010 Hb_000327_160 Hb_000327_160 Hb_001008_180--Hb_000327_160 Hb_000950_010 Hb_000950_010 Hb_001008_180--Hb_000950_010 Hb_002748_030 Hb_002748_030 Hb_001008_180--Hb_002748_030 Hb_006816_470 Hb_006816_470 Hb_001008_180--Hb_006816_470 Hb_008159_010 Hb_008159_010 Hb_001008_180--Hb_008159_010 Hb_002748_020 Hb_002748_020 Hb_001008_180--Hb_002748_020 Hb_121461_020 Hb_121461_020 Hb_022276_020--Hb_121461_020 Hb_000922_010 Hb_000922_010 Hb_022276_020--Hb_000922_010 Hb_000653_010 Hb_000653_010 Hb_022276_020--Hb_000653_010 Hb_009732_040 Hb_009732_040 Hb_022276_020--Hb_009732_040 Hb_002849_150 Hb_002849_150 Hb_022276_020--Hb_002849_150 Hb_036069_020 Hb_036069_020 Hb_022276_020--Hb_036069_020 Hb_000115_010--Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_000820_050--Hb_000820_060 Hb_105328_010 Hb_105328_010 Hb_000820_050--Hb_105328_010 Hb_000820_050--Hb_006268_020 Hb_000820_050--Hb_000032_450 Hb_006472_080 Hb_006472_080 Hb_000820_050--Hb_006472_080 Hb_032496_010 Hb_032496_010 Hb_000783_030--Hb_032496_010 Hb_082793_010 Hb_082793_010 Hb_000783_030--Hb_082793_010 Hb_000783_030--Hb_002748_030 Hb_000011_290 Hb_000011_290 Hb_000783_030--Hb_000011_290 Hb_002908_060 Hb_002908_060 Hb_000783_030--Hb_002908_060 Hb_000783_030--Hb_000216_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293989 0 0.196715 0.790934 0.0611462 0.381559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.12672 1.86313 1.03548

CAGE analysis