Hb_092820_010

Information

Type -
Description -
Location Contig92820: 2685-2864
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO37207.1
description hypothetical protein CISIN_1g033834mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DDX5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033834mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092820_010 0.0 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
2 Hb_002983_060 0.2449557161 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_004195_100 0.247414661 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
4 Hb_002928_210 0.2493258581 - - -
5 Hb_153216_010 0.2552505684 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_005211_070 0.2735916352 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
7 Hb_007409_020 0.2739569472 - - -
8 Hb_116349_010 0.2895349488 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
9 Hb_003376_210 0.2981602098 - - -
10 Hb_004691_040 0.301199679 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
11 Hb_002492_020 0.3042808612 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
12 Hb_092820_020 0.305017739 - - ATP binding protein, putative [Ricinus communis]
13 Hb_010827_020 0.312888942 - - 60S ribosomal protein L17B [Hevea brasiliensis]
14 Hb_137068_010 0.3182066613 - - hypothetical protein CISIN_1g003571mg [Citrus sinensis]
15 Hb_079268_010 0.3183116177 - - -
16 Hb_007576_030 0.3236276427 - - -
17 Hb_010362_020 0.3245309719 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
18 Hb_001959_300 0.3260890654 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
19 Hb_010422_080 0.3261442151 - - -
20 Hb_003142_050 0.3293626879 - - -

Gene co-expression network

sample Hb_092820_010 Hb_092820_010 Hb_002983_060 Hb_002983_060 Hb_092820_010--Hb_002983_060 Hb_004195_100 Hb_004195_100 Hb_092820_010--Hb_004195_100 Hb_002928_210 Hb_002928_210 Hb_092820_010--Hb_002928_210 Hb_153216_010 Hb_153216_010 Hb_092820_010--Hb_153216_010 Hb_005211_070 Hb_005211_070 Hb_092820_010--Hb_005211_070 Hb_007409_020 Hb_007409_020 Hb_092820_010--Hb_007409_020 Hb_116349_010 Hb_116349_010 Hb_002983_060--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_002983_060--Hb_010422_080 Hb_008954_010 Hb_008954_010 Hb_002983_060--Hb_008954_010 Hb_004917_050 Hb_004917_050 Hb_002983_060--Hb_004917_050 Hb_000011_340 Hb_000011_340 Hb_002983_060--Hb_000011_340 Hb_004195_100--Hb_002928_210 Hb_005539_210 Hb_005539_210 Hb_004195_100--Hb_005539_210 Hb_006745_060 Hb_006745_060 Hb_004195_100--Hb_006745_060 Hb_004195_100--Hb_005211_070 Hb_001959_260 Hb_001959_260 Hb_004195_100--Hb_001959_260 Hb_002492_020 Hb_002492_020 Hb_004195_100--Hb_002492_020 Hb_002928_210--Hb_005211_070 Hb_010827_020 Hb_010827_020 Hb_002928_210--Hb_010827_020 Hb_000106_100 Hb_000106_100 Hb_002928_210--Hb_000106_100 Hb_002928_210--Hb_005539_210 Hb_000215_180 Hb_000215_180 Hb_002928_210--Hb_000215_180 Hb_004931_010 Hb_004931_010 Hb_153216_010--Hb_004931_010 Hb_006588_010 Hb_006588_010 Hb_153216_010--Hb_006588_010 Hb_004691_040 Hb_004691_040 Hb_153216_010--Hb_004691_040 Hb_001017_080 Hb_001017_080 Hb_153216_010--Hb_001017_080 Hb_035905_010 Hb_035905_010 Hb_153216_010--Hb_035905_010 Hb_010594_030 Hb_010594_030 Hb_005211_070--Hb_010594_030 Hb_005211_070--Hb_002492_020 Hb_005211_070--Hb_010827_020 Hb_005211_070--Hb_000215_180 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_000107_370 Hb_000107_370 Hb_007409_020--Hb_000107_370 Hb_012660_020 Hb_012660_020 Hb_007409_020--Hb_012660_020 Hb_003751_120 Hb_003751_120 Hb_007409_020--Hb_003751_120 Hb_030565_070 Hb_030565_070 Hb_007409_020--Hb_030565_070 Hb_007409_020--Hb_005539_210 Hb_075653_020 Hb_075653_020 Hb_007409_020--Hb_075653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76239 0 0 0 7.46031 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.563 24.8161 2.15702 12.7503 0

CAGE analysis