Hb_009249_020

Information

Type -
Description -
Location Contig9249: 4865-11697
Sequence    

Annotation

kegg
ID rcu:RCOM_1299900
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012078865.1
description PREDICTED: endoglucanase 25-like [Jatropha curcas]
swissprot
ID Q38890
description Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1
trembl
ID A0A067K8M7
description Endoglucanase OS=Jatropha curcas GN=JCGZ_13392 PE=3 SV=1
Gene Ontology
ID GO:0016787
description endo- -beta-glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009249_020 0.0 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
2 Hb_004545_180 0.1829460564 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_009838_020 0.203385116 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
4 Hb_011021_010 0.2042693853 - - kinase, putative [Ricinus communis]
5 Hb_000197_110 0.2043235337 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004899_340 0.2055532543 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_007044_160 0.2060877132 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Populus euphratica]
8 Hb_005941_030 0.2063810063 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
9 Hb_002374_550 0.2090698226 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
10 Hb_001711_080 0.2146136016 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
11 Hb_001221_190 0.2150195531 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
12 Hb_001454_080 0.2182837418 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_014497_040 0.2263870641 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
14 Hb_010812_110 0.2268334503 - - putative plant disease resistance family protein [Populus trichocarpa]
15 Hb_001855_020 0.2283954147 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
16 Hb_022149_020 0.2286427062 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014361_090 0.2345307893 - - acyl-CoA binding protein 3A [Vernicia fordii]
18 Hb_000200_070 0.2377973498 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
19 Hb_001474_040 0.2458045203 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
20 Hb_099990_020 0.2470992608 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_009249_020 Hb_009249_020 Hb_004545_180 Hb_004545_180 Hb_009249_020--Hb_004545_180 Hb_009838_020 Hb_009838_020 Hb_009249_020--Hb_009838_020 Hb_011021_010 Hb_011021_010 Hb_009249_020--Hb_011021_010 Hb_000197_110 Hb_000197_110 Hb_009249_020--Hb_000197_110 Hb_004899_340 Hb_004899_340 Hb_009249_020--Hb_004899_340 Hb_007044_160 Hb_007044_160 Hb_009249_020--Hb_007044_160 Hb_001221_190 Hb_001221_190 Hb_004545_180--Hb_001221_190 Hb_000422_070 Hb_000422_070 Hb_004545_180--Hb_000422_070 Hb_022149_020 Hb_022149_020 Hb_004545_180--Hb_022149_020 Hb_004545_180--Hb_009838_020 Hb_001711_080 Hb_001711_080 Hb_004545_180--Hb_001711_080 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_009838_020--Hb_001221_190 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_011021_010--Hb_004899_340 Hb_014361_090 Hb_014361_090 Hb_011021_010--Hb_014361_090 Hb_001623_080 Hb_001623_080 Hb_011021_010--Hb_001623_080 Hb_001969_140 Hb_001969_140 Hb_011021_010--Hb_001969_140 Hb_001493_060 Hb_001493_060 Hb_011021_010--Hb_001493_060 Hb_011021_010--Hb_000071_160 Hb_003449_060 Hb_003449_060 Hb_000197_110--Hb_003449_060 Hb_001367_010 Hb_001367_010 Hb_000197_110--Hb_001367_010 Hb_000200_070 Hb_000200_070 Hb_000197_110--Hb_000200_070 Hb_004374_130 Hb_004374_130 Hb_000197_110--Hb_004374_130 Hb_031403_030 Hb_031403_030 Hb_000197_110--Hb_031403_030 Hb_004899_340--Hb_001969_140 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_004899_340--Hb_014361_090 Hb_003102_030 Hb_003102_030 Hb_007044_160--Hb_003102_030 Hb_000914_050 Hb_000914_050 Hb_007044_160--Hb_000914_050 Hb_007044_160--Hb_005941_030 Hb_002374_550 Hb_002374_550 Hb_007044_160--Hb_002374_550 Hb_007044_160--Hb_000071_160 Hb_007044_160--Hb_001711_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158418 0.0473978 0.0721619 0.369446 0.122869 0.0812827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.034107 0.118274

CAGE analysis