Hb_028707_100

Information

Type -
Description -
Location Contig28707: 90064-92041
Sequence    

Annotation

kegg
ID rcu:RCOM_1687010
description hypothetical protein
nr
ID XP_002509813.1
description hypothetical protein RCOM_1687010 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCC9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29928: 67859-90148 , PASA_asmbl_29929: 91243-91526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028707_100 0.0 - - hypothetical protein RCOM_1687010 [Ricinus communis]
2 Hb_002186_170 0.1624822343 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
3 Hb_003023_030 0.1655168064 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
4 Hb_007101_070 0.1697529176 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
5 Hb_080601_010 0.1739473998 - - metallothionein 3-like protein [Hevea brasiliensis]
6 Hb_002186_110 0.1775788557 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
7 Hb_002534_070 0.1779872372 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
8 Hb_000175_370 0.182659415 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
9 Hb_000227_350 0.1839429735 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
10 Hb_004648_020 0.1851577507 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
11 Hb_128216_010 0.1884779211 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
12 Hb_152914_010 0.1907588828 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
13 Hb_003582_030 0.1919373996 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
14 Hb_012410_010 0.1936552157 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_000646_040 0.1942010334 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
16 Hb_000230_550 0.1944564356 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
17 Hb_003647_110 0.1958444613 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
18 Hb_000030_230 0.196196747 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
19 Hb_002170_010 0.1965118134 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
20 Hb_103225_030 0.1968775513 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_028707_100 Hb_028707_100 Hb_002186_170 Hb_002186_170 Hb_028707_100--Hb_002186_170 Hb_003023_030 Hb_003023_030 Hb_028707_100--Hb_003023_030 Hb_007101_070 Hb_007101_070 Hb_028707_100--Hb_007101_070 Hb_080601_010 Hb_080601_010 Hb_028707_100--Hb_080601_010 Hb_002186_110 Hb_002186_110 Hb_028707_100--Hb_002186_110 Hb_002534_070 Hb_002534_070 Hb_028707_100--Hb_002534_070 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_000422_060 Hb_000422_060 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_003023_030--Hb_002534_070 Hb_103225_030 Hb_103225_030 Hb_003023_030--Hb_103225_030 Hb_000120_560 Hb_000120_560 Hb_003023_030--Hb_000120_560 Hb_002960_030 Hb_002960_030 Hb_003023_030--Hb_002960_030 Hb_128216_010 Hb_128216_010 Hb_003023_030--Hb_128216_010 Hb_003023_030--Hb_000646_040 Hb_003399_110 Hb_003399_110 Hb_007101_070--Hb_003399_110 Hb_152914_010 Hb_152914_010 Hb_007101_070--Hb_152914_010 Hb_002890_330 Hb_002890_330 Hb_007101_070--Hb_002890_330 Hb_007101_070--Hb_103225_030 Hb_007101_070--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_007101_070--Hb_000137_050 Hb_080601_010--Hb_002534_070 Hb_080601_010--Hb_003023_030 Hb_000030_230 Hb_000030_230 Hb_080601_010--Hb_000030_230 Hb_004450_090 Hb_004450_090 Hb_080601_010--Hb_004450_090 Hb_080601_010--Hb_002186_170 Hb_000000_260 Hb_000000_260 Hb_080601_010--Hb_000000_260 Hb_011381_050 Hb_011381_050 Hb_002186_110--Hb_011381_050 Hb_000197_260 Hb_000197_260 Hb_002186_110--Hb_000197_260 Hb_115572_010 Hb_115572_010 Hb_002186_110--Hb_115572_010 Hb_002186_110--Hb_152914_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_180980_010 Hb_180980_010 Hb_002186_110--Hb_180980_010 Hb_002534_070--Hb_002960_030 Hb_002534_070--Hb_004450_090 Hb_002534_070--Hb_103225_030 Hb_002534_070--Hb_000646_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0702118 0.0315614 0.205239 0.0212867 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0401038

CAGE analysis