Hb_003740_040

Information

Type -
Description -
Location Contig3740: 44810-45760
Sequence    

Annotation

kegg
ID rcu:RCOM_0191600
description Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative (EC:3.4.19.12)
nr
ID XP_002532357.1
description Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
swissprot
ID Q06AB3
description Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa GN=UCHL3 PE=2 SV=1
trembl
ID B9T288
description Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_0191600 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin carboxyl-terminal hydrolase isozyme l3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38190: 44966-45271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003740_040 0.0 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
2 Hb_155541_020 0.1840585583 - - -
3 Hb_007441_090 0.1898469253 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
4 Hb_001708_010 0.1975641634 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
5 Hb_106688_010 0.2158385407 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
6 Hb_001059_140 0.2297017364 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
7 Hb_066514_010 0.2319394425 - - hypothetical protein RCOM_0204720 [Ricinus communis]
8 Hb_028089_020 0.2353057418 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
9 Hb_165402_010 0.2353911531 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
10 Hb_188313_010 0.2355067775 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
11 Hb_000111_030 0.236685545 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
12 Hb_185506_010 0.2369698797 - - choline monooxygenase, putative [Ricinus communis]
13 Hb_001518_070 0.2375150223 - - conserved hypothetical protein [Ricinus communis]
14 Hb_100137_010 0.2387631447 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
15 Hb_004525_080 0.2393357514 - - Sugar transporter ERD6-like 6 [Morus notabilis]
16 Hb_001217_040 0.2416543593 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
17 Hb_009083_030 0.2448814294 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
18 Hb_130613_010 0.2461645708 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
19 Hb_005539_310 0.2480242159 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
20 Hb_001217_010 0.2495787265 - - hypothetical protein JCGZ_04022 [Jatropha curcas]

Gene co-expression network

sample Hb_003740_040 Hb_003740_040 Hb_155541_020 Hb_155541_020 Hb_003740_040--Hb_155541_020 Hb_007441_090 Hb_007441_090 Hb_003740_040--Hb_007441_090 Hb_001708_010 Hb_001708_010 Hb_003740_040--Hb_001708_010 Hb_106688_010 Hb_106688_010 Hb_003740_040--Hb_106688_010 Hb_001059_140 Hb_001059_140 Hb_003740_040--Hb_001059_140 Hb_066514_010 Hb_066514_010 Hb_003740_040--Hb_066514_010 Hb_186647_010 Hb_186647_010 Hb_155541_020--Hb_186647_010 Hb_001357_030 Hb_001357_030 Hb_155541_020--Hb_001357_030 Hb_000302_100 Hb_000302_100 Hb_155541_020--Hb_000302_100 Hb_155541_020--Hb_007441_090 Hb_155541_020--Hb_066514_010 Hb_007441_090--Hb_106688_010 Hb_007441_090--Hb_066514_010 Hb_165402_010 Hb_165402_010 Hb_007441_090--Hb_165402_010 Hb_018691_010 Hb_018691_010 Hb_007441_090--Hb_018691_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_007441_090--Hb_001708_010 Hb_001708_010--Hb_106688_010 Hb_114079_010 Hb_114079_010 Hb_001708_010--Hb_114079_010 Hb_157968_010 Hb_157968_010 Hb_001708_010--Hb_157968_010 Hb_048183_010 Hb_048183_010 Hb_001708_010--Hb_048183_010 Hb_106688_010--Hb_165402_010 Hb_077573_010 Hb_077573_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_145317_010 Hb_145317_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_048702_010 Hb_048702_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_066514_010--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.510921 3.66321 0.950372 10.9196 0.6831 3.96156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.29462 0.591499 1.34253 0.97138

CAGE analysis