Hb_129105_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig129105: 970-1818
Sequence    

Annotation

kegg
ID rcu:RCOM_1361210
description DNA binding protein, putative
nr
ID XP_002532067.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9T1F0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1361210 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129105_010 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_004453_190 0.1798152222 - - -
3 Hb_004112_060 0.2562848096 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
4 Hb_002984_020 0.2775348845 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
5 Hb_000733_100 0.2801378869 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000599_220 0.2837527022 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
7 Hb_185506_010 0.2940643554 - - choline monooxygenase, putative [Ricinus communis]
8 Hb_002243_050 0.2949069976 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
9 Hb_001421_050 0.2999935417 - - -
10 Hb_125948_010 0.3036877121 - - heat-shock protein, putative [Ricinus communis]
11 Hb_021596_060 0.3040885877 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
12 Hb_005170_020 0.3059165703 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_003740_040 0.3066041575 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
14 Hb_001016_020 0.3086315941 - - conserved hypothetical protein [Ricinus communis]
15 Hb_163400_010 0.3092949811 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
16 Hb_000352_240 0.3148087131 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_022534_010 0.3166355596 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
18 Hb_008643_020 0.3171749673 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
19 Hb_001404_030 0.3188192826 - - DWNN domain isoform 3 [Theobroma cacao]
20 Hb_133661_010 0.3195258166 - - hypothetical protein JCGZ_11734 [Jatropha curcas]

Gene co-expression network

sample Hb_129105_010 Hb_129105_010 Hb_004453_190 Hb_004453_190 Hb_129105_010--Hb_004453_190 Hb_004112_060 Hb_004112_060 Hb_129105_010--Hb_004112_060 Hb_002984_020 Hb_002984_020 Hb_129105_010--Hb_002984_020 Hb_000733_100 Hb_000733_100 Hb_129105_010--Hb_000733_100 Hb_000599_220 Hb_000599_220 Hb_129105_010--Hb_000599_220 Hb_185506_010 Hb_185506_010 Hb_129105_010--Hb_185506_010 Hb_139569_010 Hb_139569_010 Hb_004453_190--Hb_139569_010 Hb_001016_020 Hb_001016_020 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_026186_010 Hb_026186_010 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010 Hb_001459_040 Hb_001459_040 Hb_004112_060--Hb_001459_040 Hb_000808_120 Hb_000808_120 Hb_004112_060--Hb_000808_120 Hb_002243_050 Hb_002243_050 Hb_004112_060--Hb_002243_050 Hb_053073_010 Hb_053073_010 Hb_004112_060--Hb_053073_010 Hb_001514_250 Hb_001514_250 Hb_004112_060--Hb_001514_250 Hb_071781_010 Hb_071781_010 Hb_004112_060--Hb_071781_010 Hb_007951_090 Hb_007951_090 Hb_002984_020--Hb_007951_090 Hb_003925_130 Hb_003925_130 Hb_002984_020--Hb_003925_130 Hb_072290_010 Hb_072290_010 Hb_002984_020--Hb_072290_010 Hb_010810_040 Hb_010810_040 Hb_002984_020--Hb_010810_040 Hb_000304_040 Hb_000304_040 Hb_002984_020--Hb_000304_040 Hb_178711_010 Hb_178711_010 Hb_002984_020--Hb_178711_010 Hb_011942_010 Hb_011942_010 Hb_000733_100--Hb_011942_010 Hb_130613_010 Hb_130613_010 Hb_000733_100--Hb_130613_010 Hb_040747_010 Hb_040747_010 Hb_000733_100--Hb_040747_010 Hb_000363_330 Hb_000363_330 Hb_000733_100--Hb_000363_330 Hb_169505_010 Hb_169505_010 Hb_000733_100--Hb_169505_010 Hb_002388_010 Hb_002388_010 Hb_000733_100--Hb_002388_010 Hb_002284_110 Hb_002284_110 Hb_000599_220--Hb_002284_110 Hb_000599_220--Hb_000733_100 Hb_002173_010 Hb_002173_010 Hb_000599_220--Hb_002173_010 Hb_002571_040 Hb_002571_040 Hb_000599_220--Hb_002571_040 Hb_006925_090 Hb_006925_090 Hb_000599_220--Hb_006925_090 Hb_003740_040 Hb_003740_040 Hb_185506_010--Hb_003740_040 Hb_001454_080 Hb_001454_080 Hb_185506_010--Hb_001454_080 Hb_004525_080 Hb_004525_080 Hb_185506_010--Hb_004525_080 Hb_007044_160 Hb_007044_160 Hb_185506_010--Hb_007044_160 Hb_001080_120 Hb_001080_120 Hb_185506_010--Hb_001080_120 Hb_000099_190 Hb_000099_190 Hb_185506_010--Hb_000099_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150324 0.0624674 0.313699 0.0509475 0.0639506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0981593 0 0 0

CAGE analysis