Hb_002173_010

Information

Type -
Description -
Location Contig2173: 31674-32506
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22435: 31802-32377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002173_010 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_006120_080 0.2564646357 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
3 Hb_000717_040 0.2585440229 transcription factor TF Family: B3 hypothetical protein POPTR_0015s03590g [Populus trichocarpa]
4 Hb_006018_050 0.2645362948 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
5 Hb_178793_010 0.2682175225 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
6 Hb_001953_140 0.2714101209 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
7 Hb_000072_190 0.2820956436 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
8 Hb_164114_010 0.2874909014 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_178658_010 0.2878834958 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
10 Hb_089140_110 0.2948985578 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_124677_040 0.2962455542 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
12 Hb_002078_290 0.2990372502 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
13 Hb_013358_020 0.2990563537 - - ccr4-associated factor, putative [Ricinus communis]
14 Hb_001246_160 0.300530657 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
15 Hb_000836_160 0.3020479207 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
16 Hb_031295_010 0.3029942828 - - hypothetical protein JCGZ_19530 [Jatropha curcas]
17 Hb_159809_050 0.30368187 - - AT14A, putative [Ricinus communis]
18 Hb_000920_220 0.3041588813 - - PREDICTED: uncharacterized protein LOC105631216 [Jatropha curcas]
19 Hb_000925_030 0.3044526105 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000594_110 0.3049048716 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002173_010 Hb_002173_010 Hb_006120_080 Hb_006120_080 Hb_002173_010--Hb_006120_080 Hb_000717_040 Hb_000717_040 Hb_002173_010--Hb_000717_040 Hb_006018_050 Hb_006018_050 Hb_002173_010--Hb_006018_050 Hb_178793_010 Hb_178793_010 Hb_002173_010--Hb_178793_010 Hb_001953_140 Hb_001953_140 Hb_002173_010--Hb_001953_140 Hb_000072_190 Hb_000072_190 Hb_002173_010--Hb_000072_190 Hb_001366_130 Hb_001366_130 Hb_006120_080--Hb_001366_130 Hb_004837_050 Hb_004837_050 Hb_006120_080--Hb_004837_050 Hb_002804_010 Hb_002804_010 Hb_006120_080--Hb_002804_010 Hb_006120_080--Hb_178793_010 Hb_002073_020 Hb_002073_020 Hb_006120_080--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_006120_080--Hb_002874_170 Hb_164114_010 Hb_164114_010 Hb_000717_040--Hb_164114_010 Hb_089140_110 Hb_089140_110 Hb_000717_040--Hb_089140_110 Hb_002325_060 Hb_002325_060 Hb_000717_040--Hb_002325_060 Hb_000984_260 Hb_000984_260 Hb_000717_040--Hb_000984_260 Hb_000717_040--Hb_001953_140 Hb_003633_100 Hb_003633_100 Hb_000717_040--Hb_003633_100 Hb_006018_050--Hb_000072_190 Hb_001579_070 Hb_001579_070 Hb_006018_050--Hb_001579_070 Hb_031822_010 Hb_031822_010 Hb_006018_050--Hb_031822_010 Hb_006018_050--Hb_089140_110 Hb_000162_130 Hb_000162_130 Hb_006018_050--Hb_000162_130 Hb_006018_050--Hb_003633_100 Hb_018691_020 Hb_018691_020 Hb_178793_010--Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_000031_300 Hb_000031_300 Hb_001953_140--Hb_000031_300 Hb_004116_150 Hb_004116_150 Hb_001953_140--Hb_004116_150 Hb_031108_010 Hb_031108_010 Hb_001953_140--Hb_031108_010 Hb_001329_080 Hb_001329_080 Hb_001953_140--Hb_001329_080 Hb_001433_160 Hb_001433_160 Hb_001953_140--Hb_001433_160 Hb_013358_020 Hb_013358_020 Hb_000072_190--Hb_013358_020 Hb_084849_010 Hb_084849_010 Hb_000072_190--Hb_084849_010 Hb_000072_190--Hb_031822_010 Hb_000749_070 Hb_000749_070 Hb_000072_190--Hb_000749_070 Hb_004631_200 Hb_004631_200 Hb_000072_190--Hb_004631_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.577345 0.336945 0.333628 0.0546668 0.147712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.31629 0 0.0426667 0.105871

CAGE analysis