Hb_164114_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig164114: 1720-6539
Sequence    

Annotation

kegg
ID rcu:RCOM_1326830
description transcription factor, putative
nr
ID XP_002520050.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID B9S231
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164114_010 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_001722_060 0.1574781053 - - -
3 Hb_000717_040 0.1909533261 transcription factor TF Family: B3 hypothetical protein POPTR_0015s03590g [Populus trichocarpa]
4 Hb_005054_020 0.2007455939 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
5 Hb_033642_050 0.2018631831 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
6 Hb_000077_160 0.2079722292 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_001493_140 0.2120238536 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
8 Hb_007192_050 0.2121632972 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
9 Hb_001951_190 0.2156864283 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
10 Hb_000247_140 0.2165496341 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
11 Hb_001953_140 0.2216331278 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
12 Hb_000210_160 0.2222910923 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_003581_050 0.222989915 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
14 Hb_005408_080 0.2231476234 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
15 Hb_004116_150 0.2235530554 - - conserved hypothetical protein [Ricinus communis]
16 Hb_062226_150 0.2241370617 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_002325_060 0.2242292956 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
18 Hb_004881_010 0.2251198531 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
19 Hb_007479_080 0.2266852526 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
20 Hb_005245_140 0.2269434182 - - PREDICTED: ribonuclease 2 [Jatropha curcas]

Gene co-expression network

sample Hb_164114_010 Hb_164114_010 Hb_001722_060 Hb_001722_060 Hb_164114_010--Hb_001722_060 Hb_000717_040 Hb_000717_040 Hb_164114_010--Hb_000717_040 Hb_005054_020 Hb_005054_020 Hb_164114_010--Hb_005054_020 Hb_033642_050 Hb_033642_050 Hb_164114_010--Hb_033642_050 Hb_000077_160 Hb_000077_160 Hb_164114_010--Hb_000077_160 Hb_001493_140 Hb_001493_140 Hb_164114_010--Hb_001493_140 Hb_001989_070 Hb_001989_070 Hb_001722_060--Hb_001989_070 Hb_002849_180 Hb_002849_180 Hb_001722_060--Hb_002849_180 Hb_000613_250 Hb_000613_250 Hb_001722_060--Hb_000613_250 Hb_000007_440 Hb_000007_440 Hb_001722_060--Hb_000007_440 Hb_003430_070 Hb_003430_070 Hb_001722_060--Hb_003430_070 Hb_089140_110 Hb_089140_110 Hb_000717_040--Hb_089140_110 Hb_002325_060 Hb_002325_060 Hb_000717_040--Hb_002325_060 Hb_000984_260 Hb_000984_260 Hb_000717_040--Hb_000984_260 Hb_001953_140 Hb_001953_140 Hb_000717_040--Hb_001953_140 Hb_003633_100 Hb_003633_100 Hb_000717_040--Hb_003633_100 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000365_280 Hb_000365_280 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_000567_180 Hb_000567_180 Hb_033642_050--Hb_000567_180 Hb_007192_050 Hb_007192_050 Hb_033642_050--Hb_007192_050 Hb_000946_070 Hb_000946_070 Hb_033642_050--Hb_000946_070 Hb_000007_430 Hb_000007_430 Hb_033642_050--Hb_000007_430 Hb_002539_040 Hb_002539_040 Hb_033642_050--Hb_002539_040 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_000077_160--Hb_003849_190 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290 Hb_034507_090 Hb_034507_090 Hb_001493_140--Hb_034507_090 Hb_000563_630 Hb_000563_630 Hb_001493_140--Hb_000563_630 Hb_000645_160 Hb_000645_160 Hb_001493_140--Hb_000645_160 Hb_000997_240 Hb_000997_240 Hb_001493_140--Hb_000997_240 Hb_000742_130 Hb_000742_130 Hb_001493_140--Hb_000742_130 Hb_002999_080 Hb_002999_080 Hb_001493_140--Hb_002999_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157449 0.321451 0.290772 0.518003 0 0.0161394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.16952 0 0.10168 0.176361

CAGE analysis