Hb_000946_070

Information

Type -
Description -
Location Contig946: 85249-86510
Sequence    

Annotation

kegg
ID rcu:RCOM_1417160
description chaperone protein DNAj, putative
nr
ID XP_002531090.1
description chaperone protein DNAj, putative [Ricinus communis]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID B9SYM1
description Chaperone protein DNAj, putative OS=Ricinus communis GN=RCOM_1417160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63261: 85253-86549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_070 0.0 - - chaperone protein DNAj, putative [Ricinus communis]
2 Hb_007416_290 0.1297434809 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
3 Hb_000057_100 0.1369934073 - - Peroxidase 57 precursor, putative [Ricinus communis]
4 Hb_001677_090 0.1404403722 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
5 Hb_029510_120 0.1523529586 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
6 Hb_117639_010 0.1591060877 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
7 Hb_022250_160 0.1601708719 - - respiratory burst oxidase A [Manihot esculenta]
8 Hb_007479_080 0.172900787 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
9 Hb_003411_020 0.1729660523 - - alpha-glucosidase, putative [Ricinus communis]
10 Hb_008143_040 0.1779119459 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
11 Hb_000210_040 0.1817351669 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
12 Hb_002289_140 0.1853612222 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004079_100 0.1859677065 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_007590_100 0.187390403 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
15 Hb_000567_180 0.187460447 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
16 Hb_032920_030 0.1883641504 - - signal transducer, putative [Ricinus communis]
17 Hb_003879_020 0.1891157146 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
18 Hb_004667_030 0.1910673425 - - hypothetical protein VITISV_034568 [Vitis vinifera]
19 Hb_008566_080 0.1912689145 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
20 Hb_007134_030 0.1923625021 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_070 Hb_000946_070 Hb_007416_290 Hb_007416_290 Hb_000946_070--Hb_007416_290 Hb_000057_100 Hb_000057_100 Hb_000946_070--Hb_000057_100 Hb_001677_090 Hb_001677_090 Hb_000946_070--Hb_001677_090 Hb_029510_120 Hb_029510_120 Hb_000946_070--Hb_029510_120 Hb_117639_010 Hb_117639_010 Hb_000946_070--Hb_117639_010 Hb_022250_160 Hb_022250_160 Hb_000946_070--Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_008143_040 Hb_008143_040 Hb_007416_290--Hb_008143_040 Hb_009545_030 Hb_009545_030 Hb_007416_290--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000057_100--Hb_117639_010 Hb_001488_350 Hb_001488_350 Hb_000057_100--Hb_001488_350 Hb_000057_100--Hb_008143_040 Hb_000181_220 Hb_000181_220 Hb_000057_100--Hb_000181_220 Hb_143766_070 Hb_143766_070 Hb_000057_100--Hb_143766_070 Hb_000120_320 Hb_000120_320 Hb_001677_090--Hb_000120_320 Hb_149055_010 Hb_149055_010 Hb_001677_090--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001677_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_001677_090--Hb_001138_070 Hb_033772_060 Hb_033772_060 Hb_001677_090--Hb_033772_060 Hb_000011_370 Hb_000011_370 Hb_001677_090--Hb_000011_370 Hb_007659_050 Hb_007659_050 Hb_029510_120--Hb_007659_050 Hb_002370_050 Hb_002370_050 Hb_029510_120--Hb_002370_050 Hb_002233_160 Hb_002233_160 Hb_029510_120--Hb_002233_160 Hb_001688_030 Hb_001688_030 Hb_029510_120--Hb_001688_030 Hb_002809_080 Hb_002809_080 Hb_029510_120--Hb_002809_080 Hb_007875_020 Hb_007875_020 Hb_117639_010--Hb_007875_020 Hb_000337_030 Hb_000337_030 Hb_117639_010--Hb_000337_030 Hb_117639_010--Hb_022250_160 Hb_117639_010--Hb_008143_040 Hb_005663_090 Hb_005663_090 Hb_117639_010--Hb_005663_090 Hb_022250_160--Hb_004079_100 Hb_001040_200 Hb_001040_200 Hb_022250_160--Hb_001040_200 Hb_007386_030 Hb_007386_030 Hb_022250_160--Hb_007386_030 Hb_008566_080 Hb_008566_080 Hb_022250_160--Hb_008566_080 Hb_000594_160 Hb_000594_160 Hb_022250_160--Hb_000594_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.81252 12.5675 28.8268 0.0516614 0.0194184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 5.68159 0 15.2918 12.5581

CAGE analysis