Hb_007192_050

Information

Type -
Description -
Location Contig7192: 26544-30009
Sequence    

Annotation

kegg
ID rcu:RCOM_1508450
description hypothetical protein
nr
ID XP_012079965.1
description PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RAT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55541: 27312-27997 , PASA_asmbl_55542: 28750-30073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007192_050 0.0 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
2 Hb_023226_030 0.1313827151 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
3 Hb_005245_140 0.1510518825 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
4 Hb_004678_030 0.1529633717 - - fructokinase [Manihot esculenta]
5 Hb_002999_080 0.1551189568 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
6 Hb_034507_060 0.1551365544 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
7 Hb_001053_210 0.1591206944 - - -
8 Hb_000622_330 0.1592128494 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
9 Hb_002235_370 0.1640254615 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
10 Hb_010050_020 0.1642656394 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
11 Hb_004522_030 0.1652587286 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
12 Hb_000740_090 0.1659879676 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003606_050 0.1687474908 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
14 Hb_001019_160 0.1688263944 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003540_120 0.1691464014 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_000424_030 0.1693211427 - - conserved hypothetical protein [Ricinus communis]
17 Hb_172706_020 0.1697369004 - - PREDICTED: protein ABIL2 [Jatropha curcas]
18 Hb_002539_050 0.1710279062 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
19 Hb_012760_090 0.1730974402 - - Aspartic proteinase-like protein 1 [Morus notabilis]
20 Hb_000027_170 0.173740312 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]

Gene co-expression network

sample Hb_007192_050 Hb_007192_050 Hb_023226_030 Hb_023226_030 Hb_007192_050--Hb_023226_030 Hb_005245_140 Hb_005245_140 Hb_007192_050--Hb_005245_140 Hb_004678_030 Hb_004678_030 Hb_007192_050--Hb_004678_030 Hb_002999_080 Hb_002999_080 Hb_007192_050--Hb_002999_080 Hb_034507_060 Hb_034507_060 Hb_007192_050--Hb_034507_060 Hb_001053_210 Hb_001053_210 Hb_007192_050--Hb_001053_210 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_000165_090 Hb_000165_090 Hb_005245_140--Hb_000165_090 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_005245_140--Hb_004678_030 Hb_000030_020 Hb_000030_020 Hb_005245_140--Hb_000030_020 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002110_170 Hb_002110_170 Hb_005245_140--Hb_002110_170 Hb_000654_050 Hb_000654_050 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_000997_240 Hb_000997_240 Hb_002999_080--Hb_000997_240 Hb_003411_020 Hb_003411_020 Hb_002999_080--Hb_003411_020 Hb_000866_320 Hb_000866_320 Hb_002999_080--Hb_000866_320 Hb_155444_010 Hb_155444_010 Hb_002999_080--Hb_155444_010 Hb_000645_160 Hb_000645_160 Hb_002999_080--Hb_000645_160 Hb_000563_630 Hb_000563_630 Hb_002999_080--Hb_000563_630 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_004218_130 Hb_004218_130 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020 Hb_000740_090 Hb_000740_090 Hb_001053_210--Hb_000740_090 Hb_000940_210 Hb_000940_210 Hb_001053_210--Hb_000940_210 Hb_001053_210--Hb_003430_080 Hb_001053_210--Hb_023226_030 Hb_147245_010 Hb_147245_010 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158452 0.558507 0.986425 1.62104 0.0834635 0.0205139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0722323 0.208388 0 0.520346 0.479585

CAGE analysis