Hb_033642_050

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig33642: 57999-72820
Sequence    

Annotation

kegg
ID rcu:RCOM_1003880
description multidrug resistance protein 1, 2, putative (EC:3.6.3.27 3.6.3.44)
nr
ID XP_012084222.1
description PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
swissprot
ID Q9FWX7
description ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1
trembl
ID A0A0E0DUF2
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp binding cassette subfamily b4 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033642_050 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
2 Hb_164114_010 0.2018631831 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_000567_180 0.2039220971 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
4 Hb_007192_050 0.2353774616 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
5 Hb_000946_070 0.2403039212 - - chaperone protein DNAj, putative [Ricinus communis]
6 Hb_000007_430 0.2437839324 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
7 Hb_002539_040 0.2466256739 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
8 Hb_005408_070 0.2490026088 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
9 Hb_026549_050 0.2500914513 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
10 Hb_000984_260 0.2585962609 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
11 Hb_001922_060 0.2592007829 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000175_470 0.2602852635 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_002602_030 0.2624217171 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
14 Hb_019837_020 0.2637719652 - - -
15 Hb_007425_020 0.268087255 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
16 Hb_002918_130 0.2690689481 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
17 Hb_029977_020 0.2721213183 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
18 Hb_172706_020 0.27229484 - - PREDICTED: protein ABIL2 [Jatropha curcas]
19 Hb_098256_010 0.2727029449 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
20 Hb_005467_010 0.273753055 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033642_050 Hb_033642_050 Hb_164114_010 Hb_164114_010 Hb_033642_050--Hb_164114_010 Hb_000567_180 Hb_000567_180 Hb_033642_050--Hb_000567_180 Hb_007192_050 Hb_007192_050 Hb_033642_050--Hb_007192_050 Hb_000946_070 Hb_000946_070 Hb_033642_050--Hb_000946_070 Hb_000007_430 Hb_000007_430 Hb_033642_050--Hb_000007_430 Hb_002539_040 Hb_002539_040 Hb_033642_050--Hb_002539_040 Hb_001722_060 Hb_001722_060 Hb_164114_010--Hb_001722_060 Hb_000717_040 Hb_000717_040 Hb_164114_010--Hb_000717_040 Hb_005054_020 Hb_005054_020 Hb_164114_010--Hb_005054_020 Hb_000077_160 Hb_000077_160 Hb_164114_010--Hb_000077_160 Hb_001493_140 Hb_001493_140 Hb_164114_010--Hb_001493_140 Hb_005408_070 Hb_005408_070 Hb_000567_180--Hb_005408_070 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_000567_180--Hb_002539_040 Hb_000175_470 Hb_000175_470 Hb_000567_180--Hb_000175_470 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050 Hb_023226_030 Hb_023226_030 Hb_007192_050--Hb_023226_030 Hb_005245_140 Hb_005245_140 Hb_007192_050--Hb_005245_140 Hb_004678_030 Hb_004678_030 Hb_007192_050--Hb_004678_030 Hb_002999_080 Hb_002999_080 Hb_007192_050--Hb_002999_080 Hb_034507_060 Hb_034507_060 Hb_007192_050--Hb_034507_060 Hb_001053_210 Hb_001053_210 Hb_007192_050--Hb_001053_210 Hb_007416_290 Hb_007416_290 Hb_000946_070--Hb_007416_290 Hb_000057_100 Hb_000057_100 Hb_000946_070--Hb_000057_100 Hb_001677_090 Hb_001677_090 Hb_000946_070--Hb_001677_090 Hb_029510_120 Hb_029510_120 Hb_000946_070--Hb_029510_120 Hb_117639_010 Hb_117639_010 Hb_000946_070--Hb_117639_010 Hb_022250_160 Hb_022250_160 Hb_000946_070--Hb_022250_160 Hb_019863_030 Hb_019863_030 Hb_000007_430--Hb_019863_030 Hb_000005_340 Hb_000005_340 Hb_000007_430--Hb_000005_340 Hb_000984_260 Hb_000984_260 Hb_000007_430--Hb_000984_260 Hb_000007_430--Hb_000175_470 Hb_000007_430--Hb_001922_060 Hb_172706_020 Hb_172706_020 Hb_000007_430--Hb_172706_020 Hb_002539_040--Hb_005408_070 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00535295 0.0141569 0.0163718 0.0274011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0170635 0 0.0151752 0.00920096

CAGE analysis