Hb_001722_060

Information

Type -
Description -
Location Contig1722: 95533-99902
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A8XNB3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0046872
description ubx domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16230: 95487-105043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_060 0.0 - - -
2 Hb_001989_070 0.153166087 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
3 Hb_002849_180 0.154950841 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
4 Hb_164114_010 0.1574781053 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_000613_250 0.1589908292 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
6 Hb_000007_440 0.1603586886 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
7 Hb_003430_070 0.1624348006 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
8 Hb_000210_040 0.1661015247 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
9 Hb_007483_080 0.1672559657 - - hypothetical protein RCOM_0634810 [Ricinus communis]
10 Hb_001956_080 0.1675317381 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
11 Hb_001357_060 0.171014868 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
12 Hb_003581_050 0.172056379 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
13 Hb_004421_010 0.172856778 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_004116_150 0.1763108001 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007479_080 0.1763278967 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
16 Hb_018212_010 0.1766186066 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_006483_090 0.1784216157 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
18 Hb_001179_010 0.1785263275 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
19 Hb_000500_230 0.1793781577 - - hypothetical protein RCOM_0634810 [Ricinus communis]
20 Hb_001141_060 0.1794139013 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001722_060 Hb_001722_060 Hb_001989_070 Hb_001989_070 Hb_001722_060--Hb_001989_070 Hb_002849_180 Hb_002849_180 Hb_001722_060--Hb_002849_180 Hb_164114_010 Hb_164114_010 Hb_001722_060--Hb_164114_010 Hb_000613_250 Hb_000613_250 Hb_001722_060--Hb_000613_250 Hb_000007_440 Hb_000007_440 Hb_001722_060--Hb_000007_440 Hb_003430_070 Hb_003430_070 Hb_001722_060--Hb_003430_070 Hb_000365_180 Hb_000365_180 Hb_001989_070--Hb_000365_180 Hb_002010_100 Hb_002010_100 Hb_001989_070--Hb_002010_100 Hb_008749_010 Hb_008749_010 Hb_001989_070--Hb_008749_010 Hb_007483_080 Hb_007483_080 Hb_001989_070--Hb_007483_080 Hb_001989_070--Hb_002849_180 Hb_033187_020 Hb_033187_020 Hb_001989_070--Hb_033187_020 Hb_002849_180--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_002849_180--Hb_000320_450 Hb_006483_090 Hb_006483_090 Hb_002849_180--Hb_006483_090 Hb_002849_180--Hb_007483_080 Hb_002849_180--Hb_000613_250 Hb_012308_050 Hb_012308_050 Hb_002849_180--Hb_012308_050 Hb_000717_040 Hb_000717_040 Hb_164114_010--Hb_000717_040 Hb_005054_020 Hb_005054_020 Hb_164114_010--Hb_005054_020 Hb_033642_050 Hb_033642_050 Hb_164114_010--Hb_033642_050 Hb_000077_160 Hb_000077_160 Hb_164114_010--Hb_000077_160 Hb_001493_140 Hb_001493_140 Hb_164114_010--Hb_001493_140 Hb_000342_020 Hb_000342_020 Hb_000613_250--Hb_000342_020 Hb_000472_020 Hb_000472_020 Hb_000613_250--Hb_000472_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_144703_010 Hb_144703_010 Hb_000613_250--Hb_144703_010 Hb_000007_440--Hb_007483_080 Hb_000007_440--Hb_002010_100 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170 Hb_000009_150 Hb_000009_150 Hb_003430_070--Hb_000009_150 Hb_006052_060 Hb_006052_060 Hb_003430_070--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_003430_070--Hb_000329_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0433859 1.77844 1.62104 1.84255 0 0.115972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.316648 0 0.681677 1.37914

CAGE analysis