Hb_004116_150

Information

Type -
Description -
Location Contig4116: 156696-158522
Sequence    

Annotation

kegg
ID rcu:RCOM_0179140
description hypothetical protein
nr
ID XP_002533383.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID B9T564
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0179140 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40724: 157923-158074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_138086_010 0.1206660786 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_000152_170 0.1261176122 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
4 Hb_007254_050 0.1310325548 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
5 Hb_000054_140 0.1312983898 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
6 Hb_001247_160 0.14117196 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
7 Hb_008406_070 0.1438924494 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
8 Hb_001198_160 0.1472849594 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_003633_150 0.1474551298 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
10 Hb_004324_100 0.1498499222 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_005463_070 0.1506027376 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_002370_060 0.1520505753 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
13 Hb_001989_070 0.1534074508 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
14 Hb_000071_090 0.1542302937 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
15 Hb_000365_180 0.1546059552 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
16 Hb_000985_140 0.1569199515 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
17 Hb_182970_010 0.1572123938 - - calmodulin-binding protein 60-D [Populus trichocarpa]
18 Hb_033187_020 0.1586539458 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
19 Hb_009476_070 0.1593764885 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
20 Hb_000032_090 0.1601294901 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004116_150 Hb_004116_150 Hb_138086_010 Hb_138086_010 Hb_004116_150--Hb_138086_010 Hb_000152_170 Hb_000152_170 Hb_004116_150--Hb_000152_170 Hb_007254_050 Hb_007254_050 Hb_004116_150--Hb_007254_050 Hb_000054_140 Hb_000054_140 Hb_004116_150--Hb_000054_140 Hb_001247_160 Hb_001247_160 Hb_004116_150--Hb_001247_160 Hb_008406_070 Hb_008406_070 Hb_004116_150--Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_138086_010--Hb_000152_170 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_000152_170--Hb_000365_180 Hb_000563_630 Hb_000563_630 Hb_000152_170--Hb_000563_630 Hb_000163_180 Hb_000163_180 Hb_000152_170--Hb_000163_180 Hb_028841_010 Hb_028841_010 Hb_000152_170--Hb_028841_010 Hb_000152_170--Hb_008406_070 Hb_004393_030 Hb_004393_030 Hb_007254_050--Hb_004393_030 Hb_003905_040 Hb_003905_040 Hb_007254_050--Hb_003905_040 Hb_007254_050--Hb_000054_140 Hb_004837_110 Hb_004837_110 Hb_007254_050--Hb_004837_110 Hb_000985_140 Hb_000985_140 Hb_007254_050--Hb_000985_140 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_000054_140--Hb_004837_110 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_003633_150 Hb_003633_150 Hb_001247_160--Hb_003633_150 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_001019_020 Hb_001019_020 Hb_001247_160--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_001247_160--Hb_002936_030 Hb_003078_070 Hb_003078_070 Hb_001247_160--Hb_003078_070 Hb_002374_030 Hb_002374_030 Hb_008406_070--Hb_002374_030 Hb_000071_090 Hb_000071_090 Hb_008406_070--Hb_000071_090 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.63768 3.05792 2.92874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.314264 0.111452 0.95421 1.11761

CAGE analysis