Hb_007254_050

Information

Type -
Description -
Location Contig7254: 33796-35028
Sequence    

Annotation

kegg
ID rcu:RCOM_0136890
description ubiquitin-protein ligase, putative
nr
ID XP_012066053.1
description PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
swissprot
ID Q9LSA6
description U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1
trembl
ID A0A067L3L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25208 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 28-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007254_050 0.0 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
2 Hb_004393_030 0.1164736713 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
3 Hb_003905_040 0.1235954168 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
4 Hb_000054_140 0.125757264 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
5 Hb_004837_110 0.1269876405 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
6 Hb_000985_140 0.1291532501 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
7 Hb_004116_150 0.1310325548 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002890_320 0.1319045544 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
9 Hb_007102_010 0.1329884658 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
10 Hb_005867_030 0.1357025848 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
11 Hb_001660_130 0.1361718791 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
12 Hb_008810_030 0.1378760118 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_003914_050 0.1414872065 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_021254_020 0.142207954 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_073171_050 0.1426390037 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
16 Hb_006573_280 0.1454913004 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
17 Hb_009476_110 0.1456041218 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_007416_170 0.1467412251 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
19 Hb_000649_160 0.146936646 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
20 Hb_002783_140 0.1478168384 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_007254_050 Hb_007254_050 Hb_004393_030 Hb_004393_030 Hb_007254_050--Hb_004393_030 Hb_003905_040 Hb_003905_040 Hb_007254_050--Hb_003905_040 Hb_000054_140 Hb_000054_140 Hb_007254_050--Hb_000054_140 Hb_004837_110 Hb_004837_110 Hb_007254_050--Hb_004837_110 Hb_000985_140 Hb_000985_140 Hb_007254_050--Hb_000985_140 Hb_004116_150 Hb_004116_150 Hb_007254_050--Hb_004116_150 Hb_008810_030 Hb_008810_030 Hb_004393_030--Hb_008810_030 Hb_021254_020 Hb_021254_020 Hb_004393_030--Hb_021254_020 Hb_000032_090 Hb_000032_090 Hb_004393_030--Hb_000032_090 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030 Hb_149484_010 Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020 Hb_002370_060 Hb_002370_060 Hb_000054_140--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_000054_140--Hb_006573_280 Hb_000054_140--Hb_004837_110 Hb_001198_160 Hb_001198_160 Hb_000054_140--Hb_001198_160 Hb_000836_220 Hb_000836_220 Hb_000054_140--Hb_000836_220 Hb_033187_020 Hb_033187_020 Hb_000054_140--Hb_033187_020 Hb_007102_010 Hb_007102_010 Hb_004837_110--Hb_007102_010 Hb_002890_320 Hb_002890_320 Hb_004837_110--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_002375_080 Hb_002375_080 Hb_004837_110--Hb_002375_080 Hb_003078_070 Hb_003078_070 Hb_000985_140--Hb_003078_070 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000985_140--Hb_000032_090 Hb_000071_090 Hb_000071_090 Hb_000985_140--Hb_000071_090 Hb_138086_010 Hb_138086_010 Hb_004116_150--Hb_138086_010 Hb_000152_170 Hb_000152_170 Hb_004116_150--Hb_000152_170 Hb_004116_150--Hb_000054_140 Hb_004116_150--Hb_001247_160 Hb_008406_070 Hb_008406_070 Hb_004116_150--Hb_008406_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 23.0095 13.2018 8.41726 0.0161168 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.23589 0.115112 3.82264 6.27582

CAGE analysis