Hb_000733_100

Information

Type -
Description -
Location Contig733: 69716-71706
Sequence    

Annotation

kegg
ID rcu:RCOM_1483210
description hypothetical protein
nr
ID XP_002524255.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SE36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1483210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56152: 69486-71968
cDNA
(Sanger)
(ID:Location)		 017_J02.ab1: 69917-71968 , 025_O22.ab1: 69721-71968 , 034_H08.ab1: 69693-71968

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011942_010 0.1612780871 - - conserved hypothetical protein [Ricinus communis]
3 Hb_130613_010 0.2160360902 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_040747_010 0.2408873119 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
5 Hb_000363_330 0.2430837763 - - -
6 Hb_169505_010 0.2451724638 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
7 Hb_002388_010 0.2530402478 - - -
8 Hb_133724_010 0.2543419647 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000599_220 0.2546559685 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
10 Hb_146675_010 0.2551648869 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
11 Hb_073799_010 0.2554813758 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001518_070 0.2555139705 - - conserved hypothetical protein [Ricinus communis]
13 Hb_106688_010 0.2628167616 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_000649_340 0.2644848666 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
15 Hb_005686_120 0.2649050159 - - -
16 Hb_000111_030 0.2656993914 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
17 Hb_002192_090 0.2679318209 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
18 Hb_025905_020 0.2731675096 - - major allergen Pru ar 1-like [Jatropha curcas]
19 Hb_001486_020 0.2760033123 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
20 Hb_001545_050 0.2785079428 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000733_100 Hb_000733_100 Hb_011942_010 Hb_011942_010 Hb_000733_100--Hb_011942_010 Hb_130613_010 Hb_130613_010 Hb_000733_100--Hb_130613_010 Hb_040747_010 Hb_040747_010 Hb_000733_100--Hb_040747_010 Hb_000363_330 Hb_000363_330 Hb_000733_100--Hb_000363_330 Hb_169505_010 Hb_169505_010 Hb_000733_100--Hb_169505_010 Hb_002388_010 Hb_002388_010 Hb_000733_100--Hb_002388_010 Hb_011942_010--Hb_130613_010 Hb_073799_010 Hb_073799_010 Hb_011942_010--Hb_073799_010 Hb_133724_010 Hb_133724_010 Hb_011942_010--Hb_133724_010 Hb_011942_010--Hb_002388_010 Hb_001518_070 Hb_001518_070 Hb_011942_010--Hb_001518_070 Hb_000111_030 Hb_000111_030 Hb_130613_010--Hb_000111_030 Hb_130613_010--Hb_133724_010 Hb_011671_480 Hb_011671_480 Hb_130613_010--Hb_011671_480 Hb_130613_010--Hb_000363_330 Hb_001911_040 Hb_001911_040 Hb_130613_010--Hb_001911_040 Hb_005686_120 Hb_005686_120 Hb_130613_010--Hb_005686_120 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_000363_330--Hb_001911_040 Hb_004883_050 Hb_004883_050 Hb_000363_330--Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_000363_330--Hb_012760_130 Hb_066913_010 Hb_066913_010 Hb_000363_330--Hb_066913_010 Hb_145629_010 Hb_145629_010 Hb_000363_330--Hb_145629_010 Hb_041025_010 Hb_041025_010 Hb_169505_010--Hb_041025_010 Hb_035436_010 Hb_035436_010 Hb_169505_010--Hb_035436_010 Hb_178620_010 Hb_178620_010 Hb_169505_010--Hb_178620_010 Hb_169505_010--Hb_040747_010 Hb_169505_010--Hb_001518_070 Hb_169505_010--Hb_133724_010 Hb_002388_010--Hb_000111_030 Hb_002192_090 Hb_002192_090 Hb_002388_010--Hb_002192_090 Hb_002388_010--Hb_133724_010 Hb_002388_010--Hb_066913_010 Hb_002388_010--Hb_073799_010 Hb_003551_010 Hb_003551_010 Hb_002388_010--Hb_003551_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.618108 9.16191 8.15684 18.2011 1.11021 12.1318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59687 7.18437 1.72124 0.142894 0.210865

CAGE analysis