Hb_000599_220

Information

Type -
Description -
Location Contig599: 201888-204784
Sequence    

Annotation

kegg
ID egr:104417333
description uncharacterized LOC104417333
nr
ID XP_012084657.1
description PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
swissprot
ID Q9SS87
description Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana GN=SEOB PE=1 SV=1
trembl
ID A0A067LLK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_220 0.0 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
2 Hb_002284_110 0.1252405735 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
3 Hb_000733_100 0.2546559685 - - conserved hypothetical protein [Ricinus communis]
4 Hb_129105_010 0.2837527022 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_002173_010 0.3157891495 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_002571_040 0.3217060926 - - hypothetical protein RCOM_1321060 [Ricinus communis]
7 Hb_006925_090 0.3271087353 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
8 Hb_025048_020 0.3371687272 - - cytochrome P450, putative [Ricinus communis]
9 Hb_022534_010 0.340163949 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
10 Hb_004453_190 0.3420433367 - - -
11 Hb_029622_070 0.3426451515 - - -
12 Hb_103790_010 0.3438728185 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
13 Hb_001421_050 0.3525378658 - - -
14 Hb_005965_020 0.360567551 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011942_010 0.361879547 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001016_020 0.3646175133 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003740_040 0.3664863823 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
18 Hb_000242_020 0.3716087591 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
19 Hb_169505_010 0.3743636707 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
20 Hb_053345_010 0.3794768584 - - -

Gene co-expression network

sample Hb_000599_220 Hb_000599_220 Hb_002284_110 Hb_002284_110 Hb_000599_220--Hb_002284_110 Hb_000733_100 Hb_000733_100 Hb_000599_220--Hb_000733_100 Hb_129105_010 Hb_129105_010 Hb_000599_220--Hb_129105_010 Hb_002173_010 Hb_002173_010 Hb_000599_220--Hb_002173_010 Hb_002571_040 Hb_002571_040 Hb_000599_220--Hb_002571_040 Hb_006925_090 Hb_006925_090 Hb_000599_220--Hb_006925_090 Hb_002284_110--Hb_000733_100 Hb_002284_110--Hb_002173_010 Hb_002284_110--Hb_006925_090 Hb_022534_010 Hb_022534_010 Hb_002284_110--Hb_022534_010 Hb_103790_010 Hb_103790_010 Hb_002284_110--Hb_103790_010 Hb_011942_010 Hb_011942_010 Hb_000733_100--Hb_011942_010 Hb_130613_010 Hb_130613_010 Hb_000733_100--Hb_130613_010 Hb_040747_010 Hb_040747_010 Hb_000733_100--Hb_040747_010 Hb_000363_330 Hb_000363_330 Hb_000733_100--Hb_000363_330 Hb_169505_010 Hb_169505_010 Hb_000733_100--Hb_169505_010 Hb_002388_010 Hb_002388_010 Hb_000733_100--Hb_002388_010 Hb_004453_190 Hb_004453_190 Hb_129105_010--Hb_004453_190 Hb_004112_060 Hb_004112_060 Hb_129105_010--Hb_004112_060 Hb_002984_020 Hb_002984_020 Hb_129105_010--Hb_002984_020 Hb_129105_010--Hb_000733_100 Hb_185506_010 Hb_185506_010 Hb_129105_010--Hb_185506_010 Hb_006120_080 Hb_006120_080 Hb_002173_010--Hb_006120_080 Hb_000717_040 Hb_000717_040 Hb_002173_010--Hb_000717_040 Hb_006018_050 Hb_006018_050 Hb_002173_010--Hb_006018_050 Hb_178793_010 Hb_178793_010 Hb_002173_010--Hb_178793_010 Hb_001953_140 Hb_001953_140 Hb_002173_010--Hb_001953_140 Hb_000072_190 Hb_000072_190 Hb_002173_010--Hb_000072_190 Hb_005965_020 Hb_005965_020 Hb_002571_040--Hb_005965_020 Hb_000216_010 Hb_000216_010 Hb_002571_040--Hb_000216_010 Hb_000772_060 Hb_000772_060 Hb_002571_040--Hb_000772_060 Hb_002918_130 Hb_002918_130 Hb_002571_040--Hb_002918_130 Hb_011099_010 Hb_011099_010 Hb_002571_040--Hb_011099_010 Hb_006503_010 Hb_006503_010 Hb_002571_040--Hb_006503_010 Hb_011505_010 Hb_011505_010 Hb_006925_090--Hb_011505_010 Hb_000260_150 Hb_000260_150 Hb_006925_090--Hb_000260_150 Hb_026527_040 Hb_026527_040 Hb_006925_090--Hb_026527_040 Hb_104498_030 Hb_104498_030 Hb_006925_090--Hb_104498_030 Hb_171062_010 Hb_171062_010 Hb_006925_090--Hb_171062_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0198549 0.00782728 0.0214017 0 0.0192658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0178964 0 0 0

CAGE analysis