Hb_000676_280

Information

Type -
Description -
Location Contig676: 238387-242055
Sequence    

Annotation

kegg
ID rcu:RCOM_0415500
description ATP binding protein, putative
nr
ID XP_002533655.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SD39
description Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1
trembl
ID B9T5Y6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0415500 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_280 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_021596_060 0.2232385343 - - PREDICTED: peroxidase 56-like, partial [Solanum tuberosum]
3 Hb_012753_180 0.2441936536 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
4 Hb_001329_020 0.2836937521 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
5 Hb_000236_170 0.2947290897 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
6 Hb_052802_010 0.2971328251 - - kinase, putative [Ricinus communis]
7 Hb_001804_030 0.2986577114 - - kinase, putative [Ricinus communis]
8 Hb_004785_050 0.3053573429 - - PREDICTED: serine decarboxylase [Jatropha curcas]
9 Hb_000707_040 0.3068800665 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
10 Hb_000116_200 0.3085664921 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
11 Hb_000413_080 0.3128393227 - - -
12 Hb_005306_090 0.3146930931 - - -
13 Hb_003098_010 0.3188158947 - - -
14 Hb_011099_010 0.3214177665 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_003226_130 0.3232371773 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
16 Hb_001143_230 0.3232781216 - - beta-galactosidase family protein [Populus trichocarpa]
17 Hb_155541_020 0.3242271561 - - -
18 Hb_001894_080 0.3254598495 - - ATP binding protein, putative [Ricinus communis]
19 Hb_008864_030 0.32576861 - - -
20 Hb_006538_160 0.32872207 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000676_280 Hb_000676_280 Hb_021596_060 Hb_021596_060 Hb_000676_280--Hb_021596_060 Hb_012753_180 Hb_012753_180 Hb_000676_280--Hb_012753_180 Hb_001329_020 Hb_001329_020 Hb_000676_280--Hb_001329_020 Hb_000236_170 Hb_000236_170 Hb_000676_280--Hb_000236_170 Hb_052802_010 Hb_052802_010 Hb_000676_280--Hb_052802_010 Hb_001804_030 Hb_001804_030 Hb_000676_280--Hb_001804_030 Hb_005306_090 Hb_005306_090 Hb_021596_060--Hb_005306_090 Hb_021596_060--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_021596_060--Hb_000707_040 Hb_021596_060--Hb_001329_020 Hb_004453_190 Hb_004453_190 Hb_021596_060--Hb_004453_190 Hb_012753_180--Hb_001329_020 Hb_003226_130 Hb_003226_130 Hb_012753_180--Hb_003226_130 Hb_027136_020 Hb_027136_020 Hb_012753_180--Hb_027136_020 Hb_005227_050 Hb_005227_050 Hb_012753_180--Hb_005227_050 Hb_000302_100 Hb_000302_100 Hb_001329_020--Hb_000302_100 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_004117_330 Hb_004117_330 Hb_001329_020--Hb_004117_330 Hb_003536_090 Hb_003536_090 Hb_001329_020--Hb_003536_090 Hb_001329_020--Hb_000707_040 Hb_000042_350 Hb_000042_350 Hb_000236_170--Hb_000042_350 Hb_003988_020 Hb_003988_020 Hb_000236_170--Hb_003988_020 Hb_001894_080 Hb_001894_080 Hb_000236_170--Hb_001894_080 Hb_002003_100 Hb_002003_100 Hb_000236_170--Hb_002003_100 Hb_001341_140 Hb_001341_140 Hb_000236_170--Hb_001341_140 Hb_006663_110 Hb_006663_110 Hb_000236_170--Hb_006663_110 Hb_001810_050 Hb_001810_050 Hb_052802_010--Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_052802_010--Hb_004204_040 Hb_007545_200 Hb_007545_200 Hb_052802_010--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_071079_060 Hb_071079_060 Hb_052802_010--Hb_071079_060 Hb_006538_160 Hb_006538_160 Hb_001804_030--Hb_006538_160 Hb_001268_320 Hb_001268_320 Hb_001804_030--Hb_001268_320 Hb_034299_070 Hb_034299_070 Hb_001804_030--Hb_034299_070 Hb_001946_370 Hb_001946_370 Hb_001804_030--Hb_001946_370 Hb_000210_190 Hb_000210_190 Hb_001804_030--Hb_000210_190 Hb_126711_010 Hb_126711_010 Hb_001804_030--Hb_126711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140461 0.0127313 0.00520024 0.0451296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.012537 0 0.00497519 0

CAGE analysis