Hb_001946_370

Information

Type -
Description -
Location Contig1946: 306701-306998
Sequence    

Annotation

kegg
ID rcu:RCOM_0221110
description hypothetical protein
nr
ID XP_002524464.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9XI29
description Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2
trembl
ID B9SEP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_052802_010 0.2387065105 - - kinase, putative [Ricinus communis]
3 Hb_001804_030 0.2660670571 - - kinase, putative [Ricinus communis]
4 Hb_007545_200 0.2857846749 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_148209_030 0.2859767978 - - hypothetical protein VITISV_017120 [Vitis vinifera]
6 Hb_020805_160 0.2900483471 - - -
7 Hb_004204_040 0.2954384399 - - -
8 Hb_003544_040 0.2961652992 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
9 Hb_071079_060 0.2971244656 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
10 Hb_002164_010 0.2973086401 - - Stellacyanin, putative [Ricinus communis]
11 Hb_130739_010 0.2984617582 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_006538_160 0.3008945648 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025615_010 0.303381131 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
14 Hb_001810_050 0.3034939475 - - conserved hypothetical protein [Ricinus communis]
15 Hb_143933_010 0.3046449564 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_002659_110 0.3051262135 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_119600_020 0.3060791715 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_116360_010 0.3067693205 - - -
19 Hb_001269_100 0.3157844077 - - plasma membrane ATPase 1, partial [Triticum aestivum]
20 Hb_012640_010 0.3181791718 - - -

Gene co-expression network

sample Hb_001946_370 Hb_001946_370 Hb_052802_010 Hb_052802_010 Hb_001946_370--Hb_052802_010 Hb_001804_030 Hb_001804_030 Hb_001946_370--Hb_001804_030 Hb_007545_200 Hb_007545_200 Hb_001946_370--Hb_007545_200 Hb_148209_030 Hb_148209_030 Hb_001946_370--Hb_148209_030 Hb_020805_160 Hb_020805_160 Hb_001946_370--Hb_020805_160 Hb_004204_040 Hb_004204_040 Hb_001946_370--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_052802_010--Hb_001810_050 Hb_052802_010--Hb_004204_040 Hb_052802_010--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_071079_060 Hb_071079_060 Hb_052802_010--Hb_071079_060 Hb_006538_160 Hb_006538_160 Hb_001804_030--Hb_006538_160 Hb_001268_320 Hb_001268_320 Hb_001804_030--Hb_001268_320 Hb_034299_070 Hb_034299_070 Hb_001804_030--Hb_034299_070 Hb_000210_190 Hb_000210_190 Hb_001804_030--Hb_000210_190 Hb_126711_010 Hb_126711_010 Hb_001804_030--Hb_126711_010 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_119600_020 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_007545_200--Hb_020805_160 Hb_007545_200--Hb_001810_050 Hb_000345_070 Hb_000345_070 Hb_148209_030--Hb_000345_070 Hb_006663_110 Hb_006663_110 Hb_148209_030--Hb_006663_110 Hb_000016_050 Hb_000016_050 Hb_148209_030--Hb_000016_050 Hb_003058_250 Hb_003058_250 Hb_148209_030--Hb_003058_250 Hb_002301_090 Hb_002301_090 Hb_148209_030--Hb_002301_090 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_020805_160--Hb_071079_060 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_002659_110 Hb_002659_110 Hb_004204_040--Hb_002659_110 Hb_004204_040--Hb_001810_050 Hb_004204_040--Hb_071079_060 Hb_010926_020 Hb_010926_020 Hb_004204_040--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_004204_040--Hb_057018_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45972 0.854449 0.462357 4.16542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.553443 0.196202 0

CAGE analysis