Hb_148209_030

Information

Type -
Description -
Location Contig148209: 31716-32598
Sequence    

Annotation

kegg
ID vvi:100853060
description organ-specific protein P4-like
nr
ID CAN67243.1
description hypothetical protein VITISV_017120 [Vitis vinifera]
swissprot
ID P17772
description Organ-specific protein S2 OS=Pisum sativum PE=2 SV=1
trembl
ID A5AWY4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_030 0.0 - - hypothetical protein VITISV_017120 [Vitis vinifera]
2 Hb_000345_070 0.2734397184 rubber biosynthesis Gene Name: SRPP6 -
3 Hb_001946_370 0.2859767978 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006663_110 0.292206059 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
5 Hb_000016_050 0.3146029515 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
6 Hb_003058_250 0.3228422893 - - hypothetical protein RCOM_0006440 [Ricinus communis]
7 Hb_002301_090 0.3330528308 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
8 Hb_001369_680 0.336876516 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
9 Hb_000100_060 0.3380019291 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
10 Hb_002217_280 0.3506195244 - - conserved hypothetical protein [Ricinus communis]
11 Hb_183671_010 0.3509184475 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_005539_370 0.3536590004 - - ring finger protein, putative [Ricinus communis]
13 Hb_000313_330 0.3557401551 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
14 Hb_001163_140 0.3604314753 - - -
15 Hb_001377_430 0.3625727974 - - PREDICTED: laccase-6 [Jatropha curcas]
16 Hb_001391_050 0.3679010337 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
17 Hb_105959_010 0.3686677708 - - asparagine synthetase, putative [Ricinus communis]
18 Hb_036693_020 0.3706172304 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
19 Hb_003902_080 0.3750822503 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
20 Hb_001688_090 0.3750934635 - - alcohol dehydrogenase 7 [Vitis vinifera]

Gene co-expression network

sample Hb_148209_030 Hb_148209_030 Hb_000345_070 Hb_000345_070 Hb_148209_030--Hb_000345_070 Hb_001946_370 Hb_001946_370 Hb_148209_030--Hb_001946_370 Hb_006663_110 Hb_006663_110 Hb_148209_030--Hb_006663_110 Hb_000016_050 Hb_000016_050 Hb_148209_030--Hb_000016_050 Hb_003058_250 Hb_003058_250 Hb_148209_030--Hb_003058_250 Hb_002301_090 Hb_002301_090 Hb_148209_030--Hb_002301_090 Hb_000532_090 Hb_000532_090 Hb_000345_070--Hb_000532_090 Hb_000100_060 Hb_000100_060 Hb_000345_070--Hb_000100_060 Hb_004785_050 Hb_004785_050 Hb_000345_070--Hb_004785_050 Hb_002609_250 Hb_002609_250 Hb_000345_070--Hb_002609_250 Hb_001621_120 Hb_001621_120 Hb_000345_070--Hb_001621_120 Hb_052802_010 Hb_052802_010 Hb_001946_370--Hb_052802_010 Hb_001804_030 Hb_001804_030 Hb_001946_370--Hb_001804_030 Hb_007545_200 Hb_007545_200 Hb_001946_370--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_001946_370--Hb_020805_160 Hb_004204_040 Hb_004204_040 Hb_001946_370--Hb_004204_040 Hb_183671_010 Hb_183671_010 Hb_006663_110--Hb_183671_010 Hb_001369_680 Hb_001369_680 Hb_006663_110--Hb_001369_680 Hb_115832_010 Hb_115832_010 Hb_006663_110--Hb_115832_010 Hb_001688_090 Hb_001688_090 Hb_006663_110--Hb_001688_090 Hb_001391_050 Hb_001391_050 Hb_006663_110--Hb_001391_050 Hb_005601_030 Hb_005601_030 Hb_006663_110--Hb_005601_030 Hb_012606_010 Hb_012606_010 Hb_000016_050--Hb_012606_010 Hb_000016_050--Hb_001391_050 Hb_007925_010 Hb_007925_010 Hb_000016_050--Hb_007925_010 Hb_105959_010 Hb_105959_010 Hb_000016_050--Hb_105959_010 Hb_000375_140 Hb_000375_140 Hb_000016_050--Hb_000375_140 Hb_058620_060 Hb_058620_060 Hb_000016_050--Hb_058620_060 Hb_000733_150 Hb_000733_150 Hb_003058_250--Hb_000733_150 Hb_002793_080 Hb_002793_080 Hb_003058_250--Hb_002793_080 Hb_036537_010 Hb_036537_010 Hb_003058_250--Hb_036537_010 Hb_000003_850 Hb_000003_850 Hb_003058_250--Hb_000003_850 Hb_051055_010 Hb_051055_010 Hb_003058_250--Hb_051055_010 Hb_009449_050 Hb_009449_050 Hb_003058_250--Hb_009449_050 Hb_002631_190 Hb_002631_190 Hb_002301_090--Hb_002631_190 Hb_003581_180 Hb_003581_180 Hb_002301_090--Hb_003581_180 Hb_012092_100 Hb_012092_100 Hb_002301_090--Hb_012092_100 Hb_008864_100 Hb_008864_100 Hb_002301_090--Hb_008864_100 Hb_005276_030 Hb_005276_030 Hb_002301_090--Hb_005276_030 Hb_003861_030 Hb_003861_030 Hb_002301_090--Hb_003861_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.532485 0 0.238198 1.33249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.367303 0 0

CAGE analysis