Hb_000532_090

Information

Type -
Description -
Location Contig532: 118696-123845
Sequence    

Annotation

kegg
ID eus:EUTSA_v10000049mg
description hypothetical protein
nr
ID WP_007291883.1
description ATPase [delta proteobacterium MLMS-1]
swissprot
ID -
description -
trembl
ID Q1NV19
description ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase OS=delta proteobacterium MLMS-1 GN=MldDRAFT_0541 PE=3 SV=1
Gene Ontology
ID GO:0016787
description probable copper-transporting atpase hma5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_090 0.0 - - ATPase [delta proteobacterium MLMS-1]
2 Hb_005914_220 0.2175885999 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
3 Hb_000302_110 0.218587136 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_004925_030 0.2204943137 - - EXORDIUM like 1 [Theobroma cacao]
5 Hb_017862_040 0.224475668 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
6 Hb_001741_110 0.2259105534 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
7 Hb_009111_060 0.2269352951 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
8 Hb_031822_020 0.2276054335 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
9 Hb_001246_080 0.232062633 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
10 Hb_001998_100 0.2341582419 - - -
11 Hb_001396_270 0.2342194247 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
12 Hb_016734_050 0.2447029647 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
13 Hb_005408_110 0.2513063987 - - purine permease, putative [Ricinus communis]
14 Hb_003014_010 0.2519115929 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
15 Hb_012753_140 0.2523169121 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
16 Hb_009010_040 0.2530566238 - - Peptide transporter, putative [Ricinus communis]
17 Hb_000345_070 0.2531339226 rubber biosynthesis Gene Name: SRPP6 -
18 Hb_000521_070 0.2568770118 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
19 Hb_001153_070 0.2569897649 - - -
20 Hb_178343_010 0.2574906879 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]

Gene co-expression network

sample Hb_000532_090 Hb_000532_090 Hb_005914_220 Hb_005914_220 Hb_000532_090--Hb_005914_220 Hb_000302_110 Hb_000302_110 Hb_000532_090--Hb_000302_110 Hb_004925_030 Hb_004925_030 Hb_000532_090--Hb_004925_030 Hb_017862_040 Hb_017862_040 Hb_000532_090--Hb_017862_040 Hb_001741_110 Hb_001741_110 Hb_000532_090--Hb_001741_110 Hb_009111_060 Hb_009111_060 Hb_000532_090--Hb_009111_060 Hb_001396_270 Hb_001396_270 Hb_005914_220--Hb_001396_270 Hb_000042_120 Hb_000042_120 Hb_005914_220--Hb_000042_120 Hb_000156_150 Hb_000156_150 Hb_005914_220--Hb_000156_150 Hb_006012_030 Hb_006012_030 Hb_005914_220--Hb_006012_030 Hb_000389_130 Hb_000389_130 Hb_005914_220--Hb_000389_130 Hb_001428_010 Hb_001428_010 Hb_005914_220--Hb_001428_010 Hb_000302_110--Hb_004925_030 Hb_000521_070 Hb_000521_070 Hb_000302_110--Hb_000521_070 Hb_002582_080 Hb_002582_080 Hb_000302_110--Hb_002582_080 Hb_007575_090 Hb_007575_090 Hb_000302_110--Hb_007575_090 Hb_007741_090 Hb_007741_090 Hb_000302_110--Hb_007741_090 Hb_156850_040 Hb_156850_040 Hb_000302_110--Hb_156850_040 Hb_004925_030--Hb_000521_070 Hb_004925_030--Hb_007741_090 Hb_004925_030--Hb_002582_080 Hb_004925_030--Hb_156850_040 Hb_000236_210 Hb_000236_210 Hb_004925_030--Hb_000236_210 Hb_000331_660 Hb_000331_660 Hb_017862_040--Hb_000331_660 Hb_002701_200 Hb_002701_200 Hb_017862_040--Hb_002701_200 Hb_031822_020 Hb_031822_020 Hb_017862_040--Hb_031822_020 Hb_001804_020 Hb_001804_020 Hb_017862_040--Hb_001804_020 Hb_103942_020 Hb_103942_020 Hb_017862_040--Hb_103942_020 Hb_017524_020 Hb_017524_020 Hb_017862_040--Hb_017524_020 Hb_002374_540 Hb_002374_540 Hb_001741_110--Hb_002374_540 Hb_000087_010 Hb_000087_010 Hb_001741_110--Hb_000087_010 Hb_146255_010 Hb_146255_010 Hb_001741_110--Hb_146255_010 Hb_011169_010 Hb_011169_010 Hb_001741_110--Hb_011169_010 Hb_004884_050 Hb_004884_050 Hb_001741_110--Hb_004884_050 Hb_000313_080 Hb_000313_080 Hb_001741_110--Hb_000313_080 Hb_009111_060--Hb_031822_020 Hb_000381_140 Hb_000381_140 Hb_009111_060--Hb_000381_140 Hb_002874_100 Hb_002874_100 Hb_009111_060--Hb_002874_100 Hb_000269_050 Hb_000269_050 Hb_009111_060--Hb_000269_050 Hb_000366_070 Hb_000366_070 Hb_009111_060--Hb_000366_070 Hb_000270_590 Hb_000270_590 Hb_009111_060--Hb_000270_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0162884 0.00720229 0.0167443 0.438979 0.0136239 0.0131692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0129948 0.024804 0 0

CAGE analysis