Hb_012606_010

Information

Type transcription factor
Description TF Family: IWS1
Location Contig12606: 49401-51607
Sequence    

Annotation

kegg
ID rcu:RCOM_0009800
description hypothetical protein
nr
ID XP_012075305.1
description PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
swissprot
ID F4KFC7
description Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1
trembl
ID B9SVQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0009800 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcription elongation factor family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07946: 49893-50610 , PASA_asmbl_07947: 49873-50190 , PASA_asmbl_07948: 51280-51490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012606_010 0.0 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
2 Hb_000184_160 0.1897922622 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
3 Hb_004710_010 0.2025334209 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
4 Hb_121881_010 0.203717493 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
5 Hb_003964_020 0.208861847 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
6 Hb_001124_100 0.2093171498 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
7 Hb_000527_080 0.2110351132 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
8 Hb_001847_050 0.2114536376 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
9 Hb_000103_250 0.2120029391 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
10 Hb_000622_350 0.2122166281 - - PREDICTED: protein ABIL1 [Jatropha curcas]
11 Hb_001450_040 0.2183064549 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
12 Hb_003408_010 0.2184709328 - - fructokinase [Manihot esculenta]
13 Hb_000035_220 0.2185954504 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
14 Hb_000173_060 0.2199171052 - - Dual specificity protein phosphatase, putative [Ricinus communis]
15 Hb_004088_040 0.2223167796 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
16 Hb_006351_020 0.2236577037 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
17 Hb_008025_010 0.2245121463 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
18 Hb_001606_060 0.2253641179 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003602_020 0.2253913936 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Jatropha curcas]
20 Hb_000260_510 0.2261361672 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_012606_010 Hb_012606_010 Hb_000184_160 Hb_000184_160 Hb_012606_010--Hb_000184_160 Hb_004710_010 Hb_004710_010 Hb_012606_010--Hb_004710_010 Hb_121881_010 Hb_121881_010 Hb_012606_010--Hb_121881_010 Hb_003964_020 Hb_003964_020 Hb_012606_010--Hb_003964_020 Hb_001124_100 Hb_001124_100 Hb_012606_010--Hb_001124_100 Hb_000527_080 Hb_000527_080 Hb_012606_010--Hb_000527_080 Hb_000634_020 Hb_000634_020 Hb_000184_160--Hb_000634_020 Hb_029695_050 Hb_029695_050 Hb_000184_160--Hb_029695_050 Hb_000035_220 Hb_000035_220 Hb_000184_160--Hb_000035_220 Hb_000371_090 Hb_000371_090 Hb_000184_160--Hb_000371_090 Hb_000258_220 Hb_000258_220 Hb_000184_160--Hb_000258_220 Hb_000656_160 Hb_000656_160 Hb_000184_160--Hb_000656_160 Hb_001450_040 Hb_001450_040 Hb_004710_010--Hb_001450_040 Hb_000932_050 Hb_000932_050 Hb_004710_010--Hb_000932_050 Hb_008025_010 Hb_008025_010 Hb_004710_010--Hb_008025_010 Hb_004710_010--Hb_000527_080 Hb_009913_040 Hb_009913_040 Hb_004710_010--Hb_009913_040 Hb_019654_060 Hb_019654_060 Hb_004710_010--Hb_019654_060 Hb_001633_200 Hb_001633_200 Hb_121881_010--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_121881_010--Hb_000742_020 Hb_000057_110 Hb_000057_110 Hb_121881_010--Hb_000057_110 Hb_006829_060 Hb_006829_060 Hb_121881_010--Hb_006829_060 Hb_000684_030 Hb_000684_030 Hb_121881_010--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_121881_010--Hb_000200_300 Hb_003071_070 Hb_003071_070 Hb_003964_020--Hb_003071_070 Hb_000622_350 Hb_000622_350 Hb_003964_020--Hb_000622_350 Hb_017014_010 Hb_017014_010 Hb_003964_020--Hb_017014_010 Hb_000074_100 Hb_000074_100 Hb_003964_020--Hb_000074_100 Hb_000094_290 Hb_000094_290 Hb_003964_020--Hb_000094_290 Hb_002660_110 Hb_002660_110 Hb_003964_020--Hb_002660_110 Hb_006154_020 Hb_006154_020 Hb_001124_100--Hb_006154_020 Hb_113818_010 Hb_113818_010 Hb_001124_100--Hb_113818_010 Hb_008699_030 Hb_008699_030 Hb_001124_100--Hb_008699_030 Hb_000310_100 Hb_000310_100 Hb_001124_100--Hb_000310_100 Hb_027073_010 Hb_027073_010 Hb_001124_100--Hb_027073_010 Hb_002804_040 Hb_002804_040 Hb_001124_100--Hb_002804_040 Hb_004545_080 Hb_004545_080 Hb_000527_080--Hb_004545_080 Hb_004730_020 Hb_004730_020 Hb_000527_080--Hb_004730_020 Hb_000527_080--Hb_001450_040 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_003740_020 Hb_003740_020 Hb_000527_080--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73757 0.145869 1.84042 3.70849 0.0568057 0.512653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207434 0.299174 0.865595 1.13049 1.70035

CAGE analysis