Hb_004710_010

Information

Type -
Description -
Location Contig4710: 9003-14760
Sequence    

Annotation

kegg
ID mdm:103412356
description haloacid dehalogenase-like hydrolase domain-containing protein At3g48420
nr
ID KCW76668.1
description hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CDX6
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D010351 PE=4 SV=1
Gene Ontology
ID GO:0009570
description haloacid dehalogenase-like hydrolase domain-containing protein at3g48420

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44266: 6103-44357 , PASA_asmbl_44268: 13847-24832
cDNA
(Sanger)
(ID:Location)		 013_K14.ab1: 6103-26744

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004710_010 0.0 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
2 Hb_001450_040 0.1389990107 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
3 Hb_000932_050 0.1643374959 - - annexin [Manihot esculenta]
4 Hb_008025_010 0.1690825086 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
5 Hb_000527_080 0.1697884631 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
6 Hb_009913_040 0.1813133051 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
7 Hb_019654_060 0.1846482864 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
8 Hb_000959_300 0.1862927625 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_000173_060 0.1879904051 - - Dual specificity protein phosphatase, putative [Ricinus communis]
10 Hb_031284_030 0.1883136399 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_190 0.1892179917 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
12 Hb_006351_020 0.190060684 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
13 Hb_000856_400 0.1907344158 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
14 Hb_001623_080 0.1933971212 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_002164_020 0.1959649471 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000184_160 0.1980702495 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
17 Hb_003540_080 0.1986885775 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_003408_010 0.1999601712 - - fructokinase [Manihot esculenta]
19 Hb_002488_010 0.201456153 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
20 Hb_012807_150 0.2020162188 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004710_010 Hb_004710_010 Hb_001450_040 Hb_001450_040 Hb_004710_010--Hb_001450_040 Hb_000932_050 Hb_000932_050 Hb_004710_010--Hb_000932_050 Hb_008025_010 Hb_008025_010 Hb_004710_010--Hb_008025_010 Hb_000527_080 Hb_000527_080 Hb_004710_010--Hb_000527_080 Hb_009913_040 Hb_009913_040 Hb_004710_010--Hb_009913_040 Hb_019654_060 Hb_019654_060 Hb_004710_010--Hb_019654_060 Hb_001450_040--Hb_000932_050 Hb_001450_040--Hb_000527_080 Hb_003408_010 Hb_003408_010 Hb_001450_040--Hb_003408_010 Hb_031284_030 Hb_031284_030 Hb_001450_040--Hb_031284_030 Hb_000023_110 Hb_000023_110 Hb_001450_040--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_001450_040--Hb_012807_150 Hb_000932_050--Hb_003408_010 Hb_000856_400 Hb_000856_400 Hb_000932_050--Hb_000856_400 Hb_000932_050--Hb_000023_110 Hb_010889_010 Hb_010889_010 Hb_000932_050--Hb_010889_010 Hb_064546_010 Hb_064546_010 Hb_000932_050--Hb_064546_010 Hb_005074_040 Hb_005074_040 Hb_008025_010--Hb_005074_040 Hb_003058_100 Hb_003058_100 Hb_008025_010--Hb_003058_100 Hb_014497_010 Hb_014497_010 Hb_008025_010--Hb_014497_010 Hb_003929_180 Hb_003929_180 Hb_008025_010--Hb_003929_180 Hb_002942_230 Hb_002942_230 Hb_008025_010--Hb_002942_230 Hb_003540_080 Hb_003540_080 Hb_008025_010--Hb_003540_080 Hb_004545_080 Hb_004545_080 Hb_000527_080--Hb_004545_080 Hb_004730_020 Hb_004730_020 Hb_000527_080--Hb_004730_020 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_003740_020 Hb_003740_020 Hb_000527_080--Hb_003740_020 Hb_011926_040 Hb_011926_040 Hb_009913_040--Hb_011926_040 Hb_000173_060 Hb_000173_060 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_009913_040--Hb_008025_010 Hb_000003_030 Hb_000003_030 Hb_019654_060--Hb_000003_030 Hb_004032_210 Hb_004032_210 Hb_019654_060--Hb_004032_210 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_000581_030 Hb_000581_030 Hb_019654_060--Hb_000581_030 Hb_019654_060--Hb_002942_230 Hb_019654_060--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.592417 0.0788816 1.68038 2.66386 0.272062 0.446312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.212512 0 0.264349 0.648177 1.45014

CAGE analysis