Hb_000184_160

Information

Type -
Description -
Location Contig184: 199011-200708
Sequence    

Annotation

kegg
ID rcu:RCOM_1213440
description hypothetical protein
nr
ID XP_012089618.1
description PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JGF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17995: 198698-200984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_160 0.0 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
2 Hb_000634_020 0.1250222815 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
3 Hb_029695_050 0.1274541963 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
4 Hb_000035_220 0.134726497 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
5 Hb_000371_090 0.1373526347 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
6 Hb_000258_220 0.1401108572 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
7 Hb_000656_160 0.1473028206 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
8 Hb_000503_020 0.1489843282 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
9 Hb_000300_090 0.1494198803 - - catalytic, putative [Ricinus communis]
10 Hb_003540_080 0.1505095331 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000002_480 0.151839048 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_004126_040 0.1525992372 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002837_040 0.1537672274 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_000818_100 0.1549810318 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
15 Hb_014361_060 0.1555779173 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
16 Hb_006588_160 0.1565699906 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_002749_080 0.1587304596 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_140 0.1588115286 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
19 Hb_000261_210 0.1595549614 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_000054_040 0.1602685682 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000184_160 Hb_000184_160 Hb_000634_020 Hb_000634_020 Hb_000184_160--Hb_000634_020 Hb_029695_050 Hb_029695_050 Hb_000184_160--Hb_029695_050 Hb_000035_220 Hb_000035_220 Hb_000184_160--Hb_000035_220 Hb_000371_090 Hb_000371_090 Hb_000184_160--Hb_000371_090 Hb_000258_220 Hb_000258_220 Hb_000184_160--Hb_000258_220 Hb_000656_160 Hb_000656_160 Hb_000184_160--Hb_000656_160 Hb_002837_040 Hb_002837_040 Hb_000634_020--Hb_002837_040 Hb_006588_160 Hb_006588_160 Hb_000634_020--Hb_006588_160 Hb_000261_210 Hb_000261_210 Hb_000634_020--Hb_000261_210 Hb_002749_080 Hb_002749_080 Hb_000634_020--Hb_002749_080 Hb_000684_080 Hb_000684_080 Hb_000634_020--Hb_000684_080 Hb_004096_060 Hb_004096_060 Hb_000634_020--Hb_004096_060 Hb_000818_100 Hb_000818_100 Hb_029695_050--Hb_000818_100 Hb_011930_150 Hb_011930_150 Hb_029695_050--Hb_011930_150 Hb_135757_010 Hb_135757_010 Hb_029695_050--Hb_135757_010 Hb_030736_060 Hb_030736_060 Hb_029695_050--Hb_030736_060 Hb_029695_050--Hb_000371_090 Hb_007786_030 Hb_007786_030 Hb_029695_050--Hb_007786_030 Hb_003540_080 Hb_003540_080 Hb_000035_220--Hb_003540_080 Hb_000510_150 Hb_000510_150 Hb_000035_220--Hb_000510_150 Hb_000665_170 Hb_000665_170 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_011214_160 Hb_011214_160 Hb_000371_090--Hb_011214_160 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_029584_120 Hb_029584_120 Hb_000258_220--Hb_029584_120 Hb_000134_120 Hb_000134_120 Hb_000258_220--Hb_000134_120 Hb_000503_020 Hb_000503_020 Hb_000258_220--Hb_000503_020 Hb_074399_010 Hb_074399_010 Hb_000258_220--Hb_074399_010 Hb_000054_040 Hb_000054_040 Hb_000258_220--Hb_000054_040 Hb_000258_220--Hb_003540_080 Hb_000656_160--Hb_000371_090 Hb_000656_160--Hb_000066_030 Hb_002028_190 Hb_002028_190 Hb_000656_160--Hb_002028_190 Hb_003777_200 Hb_003777_200 Hb_000656_160--Hb_003777_200 Hb_000656_160--Hb_000258_220 Hb_000656_160--Hb_003998_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2393 4.31339 19.3403 38.5995 10.2944 7.43526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63265 2.51682 7.64743 13.6175 13.9441

CAGE analysis