Hb_001621_120

Information

Type -
Description -
Location Contig1621: 160709-161559
Sequence    

Annotation

kegg
ID rcu:RCOM_1480070
description Zeamatin precursor, putative
nr
ID XP_002524202.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID Q53MB8
description Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1
trembl
ID B9SDY3
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1480070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_120 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_000100_060 0.1836718338 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
3 Hb_003893_060 0.1944943821 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001377_430 0.2063650343 - - PREDICTED: laccase-6 [Jatropha curcas]
5 Hb_003376_370 0.2156792201 - - protein binding protein, putative [Ricinus communis]
6 Hb_000977_200 0.2164931985 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
7 Hb_000816_190 0.2213842214 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002490_030 0.2336280031 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007100_010 0.2376215519 - - hypothetical protein ARALYDRAFT_479822 [Arabidopsis lyrata subsp. lyrata]
10 Hb_000107_260 0.2428390308 - - -
11 Hb_002811_070 0.243839135 - - Cytidine/deoxycytidylate deaminase family protein isoform 1 [Theobroma cacao]
12 Hb_005843_020 0.2452852281 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_000236_210 0.2469713332 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
14 Hb_000635_020 0.2480610984 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001688_090 0.2507218982 - - alcohol dehydrogenase 7 [Vitis vinifera]
16 Hb_007617_040 0.2507525408 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
17 Hb_005951_010 0.2513393137 - - conserved hypothetical protein [Ricinus communis]
18 Hb_054865_160 0.2523820501 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
19 Hb_008185_020 0.2523830432 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
20 Hb_006816_240 0.2531705707 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_120 Hb_001621_120 Hb_000100_060 Hb_000100_060 Hb_001621_120--Hb_000100_060 Hb_003893_060 Hb_003893_060 Hb_001621_120--Hb_003893_060 Hb_001377_430 Hb_001377_430 Hb_001621_120--Hb_001377_430 Hb_003376_370 Hb_003376_370 Hb_001621_120--Hb_003376_370 Hb_000977_200 Hb_000977_200 Hb_001621_120--Hb_000977_200 Hb_000816_190 Hb_000816_190 Hb_001621_120--Hb_000816_190 Hb_000100_060--Hb_000816_190 Hb_007810_090 Hb_007810_090 Hb_000100_060--Hb_007810_090 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_000100_060--Hb_001377_430 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040 Hb_000236_210 Hb_000236_210 Hb_003893_060--Hb_000236_210 Hb_008406_050 Hb_008406_050 Hb_003893_060--Hb_008406_050 Hb_003464_100 Hb_003464_100 Hb_003893_060--Hb_003464_100 Hb_001269_100 Hb_001269_100 Hb_003893_060--Hb_001269_100 Hb_004732_070 Hb_004732_070 Hb_003893_060--Hb_004732_070 Hb_001246_080 Hb_001246_080 Hb_003893_060--Hb_001246_080 Hb_005539_370 Hb_005539_370 Hb_001377_430--Hb_005539_370 Hb_001377_430--Hb_007810_090 Hb_009748_010 Hb_009748_010 Hb_001377_430--Hb_009748_010 Hb_105959_010 Hb_105959_010 Hb_001377_430--Hb_105959_010 Hb_001205_290 Hb_001205_290 Hb_003376_370--Hb_001205_290 Hb_000270_050 Hb_000270_050 Hb_003376_370--Hb_000270_050 Hb_005916_040 Hb_005916_040 Hb_003376_370--Hb_005916_040 Hb_012016_050 Hb_012016_050 Hb_003376_370--Hb_012016_050 Hb_007617_040 Hb_007617_040 Hb_003376_370--Hb_007617_040 Hb_004884_170 Hb_004884_170 Hb_003376_370--Hb_004884_170 Hb_000107_260 Hb_000107_260 Hb_000977_200--Hb_000107_260 Hb_003086_160 Hb_003086_160 Hb_000977_200--Hb_003086_160 Hb_012286_060 Hb_012286_060 Hb_000977_200--Hb_012286_060 Hb_014705_010 Hb_014705_010 Hb_000977_200--Hb_014705_010 Hb_000191_140 Hb_000191_140 Hb_000977_200--Hb_000191_140 Hb_000977_200--Hb_000816_190 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221047 0.052786 1.07153 2.7354 0.0631443 0.173139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724104 0.113864 0.102466 0.0692635 0

CAGE analysis