Hb_009748_010

Information

Type -
Description -
Location Contig9748: 28183-32901
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10560g
description POPTRDRAFT_751215; endo-glucanase 2 family protein
nr
ID XP_012086729.1
description PREDICTED: endoglucanase 6 [Jatropha curcas]
swissprot
ID Q42059
description Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2
trembl
ID B9GL66
description Endoglucanase OS=Populus trichocarpa GN=POPTR_0001s10560g PE=3 SV=2
Gene Ontology
ID GO:0008810
description endoglucanase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63989: 28132-33122 , PASA_asmbl_63990: 30280-32492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009748_010 0.0 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
2 Hb_000742_160 0.1653822862 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
3 Hb_008566_040 0.1694230114 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
4 Hb_000765_060 0.1748419099 - - Alcohol dehydrogenase-like 6 [Glycine soja]
5 Hb_001606_060 0.1815170865 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006405_030 0.1897101048 - - hypothetical protein VITISV_043238 [Vitis vinifera]
7 Hb_007632_100 0.1945030619 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
8 Hb_033354_020 0.1965963375 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003408_010 0.2013770872 - - fructokinase [Manihot esculenta]
10 Hb_011930_150 0.207515681 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
11 Hb_000544_030 0.2084155512 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000217_020 0.210631686 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
13 Hb_010812_070 0.2107142573 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_001268_340 0.2117597471 - - Actin, putative [Ricinus communis]
15 Hb_000244_170 0.2118970225 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
16 Hb_001008_200 0.2119445302 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
17 Hb_000003_030 0.2149554912 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000622_350 0.2158772433 - - PREDICTED: protein ABIL1 [Jatropha curcas]
19 Hb_001377_430 0.2163997527 - - PREDICTED: laccase-6 [Jatropha curcas]
20 Hb_000184_160 0.2165349302 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]

Gene co-expression network

sample Hb_009748_010 Hb_009748_010 Hb_000742_160 Hb_000742_160 Hb_009748_010--Hb_000742_160 Hb_008566_040 Hb_008566_040 Hb_009748_010--Hb_008566_040 Hb_000765_060 Hb_000765_060 Hb_009748_010--Hb_000765_060 Hb_001606_060 Hb_001606_060 Hb_009748_010--Hb_001606_060 Hb_006405_030 Hb_006405_030 Hb_009748_010--Hb_006405_030 Hb_007632_100 Hb_007632_100 Hb_009748_010--Hb_007632_100 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_001008_200 Hb_001008_200 Hb_000742_160--Hb_001008_200 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_002960_150 Hb_002960_150 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_000057_110 Hb_000057_110 Hb_000765_060--Hb_000057_110 Hb_000072_300 Hb_000072_300 Hb_000765_060--Hb_000072_300 Hb_011486_060 Hb_011486_060 Hb_000765_060--Hb_011486_060 Hb_000765_060--Hb_000244_170 Hb_000181_350 Hb_000181_350 Hb_000765_060--Hb_000181_350 Hb_107495_040 Hb_107495_040 Hb_001606_060--Hb_107495_040 Hb_002174_040 Hb_002174_040 Hb_001606_060--Hb_002174_040 Hb_121881_010 Hb_121881_010 Hb_001606_060--Hb_121881_010 Hb_001606_060--Hb_008566_040 Hb_001606_060--Hb_003935_060 Hb_001102_020 Hb_001102_020 Hb_001606_060--Hb_001102_020 Hb_006405_030--Hb_007632_100 Hb_000889_100 Hb_000889_100 Hb_006405_030--Hb_000889_100 Hb_006405_030--Hb_002960_150 Hb_003605_040 Hb_003605_040 Hb_006405_030--Hb_003605_040 Hb_006405_030--Hb_000742_160 Hb_008119_030 Hb_008119_030 Hb_006405_030--Hb_008119_030 Hb_053709_040 Hb_053709_040 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5144 1.30955 35.4521 57.8933 5.27275 4.71444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4576 3.38982 12.0912 10.3913 11.1549

CAGE analysis