Hb_006405_030

Information

Type -
Description -
Location Contig6405: 32774-33885
Sequence    

Annotation

kegg
ID dosa:Os03t0364500-01
description Os03g0364500; Similar to plectin-related.
nr
ID CAN69648.1
description hypothetical protein VITISV_043238 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B3P0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52162: 32261-76834 , PASA_asmbl_52163: 32215-76799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006405_030 0.0 - - hypothetical protein VITISV_043238 [Vitis vinifera]
2 Hb_007632_100 0.1676234544 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
3 Hb_000889_100 0.1721750449 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
4 Hb_002960_150 0.1777554692 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
5 Hb_003605_040 0.178042623 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
6 Hb_000742_160 0.1800901363 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
7 Hb_008119_030 0.182369094 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
8 Hb_001195_410 0.1843137944 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
9 Hb_000684_260 0.1846104687 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
10 Hb_000544_030 0.1878546074 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009748_010 0.1897101048 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
12 Hb_000172_510 0.190026675 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
13 Hb_003669_010 0.1921143987 - - PREDICTED: psbP domain-containing protein 5, chloroplastic [Populus euphratica]
14 Hb_008566_040 0.1947634182 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
15 Hb_000816_190 0.1995215599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029695_050 0.2016039503 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
17 Hb_000002_480 0.2045511935 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
18 Hb_007786_030 0.2045811223 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
19 Hb_000074_100 0.2047855933 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000622_350 0.2053349384 - - PREDICTED: protein ABIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_006405_030 Hb_006405_030 Hb_007632_100 Hb_007632_100 Hb_006405_030--Hb_007632_100 Hb_000889_100 Hb_000889_100 Hb_006405_030--Hb_000889_100 Hb_002960_150 Hb_002960_150 Hb_006405_030--Hb_002960_150 Hb_003605_040 Hb_003605_040 Hb_006405_030--Hb_003605_040 Hb_000742_160 Hb_000742_160 Hb_006405_030--Hb_000742_160 Hb_008119_030 Hb_008119_030 Hb_006405_030--Hb_008119_030 Hb_053709_040 Hb_053709_040 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_051257_010 Hb_051257_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000094_290 Hb_000094_290 Hb_000889_100--Hb_000094_290 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_001085_260 Hb_001085_260 Hb_002960_150--Hb_001085_260 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_003605_040--Hb_008119_030 Hb_003605_040--Hb_164010_050 Hb_009222_070 Hb_009222_070 Hb_003605_040--Hb_009222_070 Hb_002498_240 Hb_002498_240 Hb_003605_040--Hb_002498_240 Hb_009808_010 Hb_009808_010 Hb_003605_040--Hb_009808_010 Hb_000818_100 Hb_000818_100 Hb_003605_040--Hb_000818_100 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_001008_200 Hb_001008_200 Hb_000742_160--Hb_001008_200 Hb_000765_060 Hb_000765_060 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1637 6.14635 30.9332 60.7733 5.59938 18.1312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5832 3.59699 10.7979 3.74311 6.63118

CAGE analysis