Hb_001377_430

Information

Type -
Description -
Location Contig1377: 398373-400855
Sequence    

Annotation

kegg
ID rcu:RCOM_0716540
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012083172.1
description PREDICTED: laccase-6 [Jatropha curcas]
swissprot
ID Q9ZPY2
description Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1
trembl
ID A0A067K9H0
description Laccase OS=Jatropha curcas GN=JCGZ_14235 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10440: 398730-399311 , PASA_asmbl_10441: 399978-400448 , PASA_asmbl_10442: 400572-400851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_430 0.0 - - PREDICTED: laccase-6 [Jatropha curcas]
2 Hb_005539_370 0.2027132884 - - ring finger protein, putative [Ricinus communis]
3 Hb_001621_120 0.2063650343 - - Zeamatin precursor, putative [Ricinus communis]
4 Hb_007810_090 0.2083732041 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
5 Hb_009748_010 0.2163997527 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
6 Hb_105959_010 0.2279751861 - - asparagine synthetase, putative [Ricinus communis]
7 Hb_000100_060 0.2301978289 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
8 Hb_006405_030 0.2359224297 - - hypothetical protein VITISV_043238 [Vitis vinifera]
9 Hb_007403_070 0.239204362 - - hypothetical protein JCGZ_23672 [Jatropha curcas]
10 Hb_000977_200 0.2404018438 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
11 Hb_007632_100 0.240659206 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
12 Hb_000816_190 0.2412302695 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000742_160 0.2524603623 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
14 Hb_000107_260 0.2551064101 - - -
15 Hb_001902_200 0.2573104345 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
16 Hb_066778_010 0.257579974 - - -
17 Hb_004147_070 0.262338051 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
18 Hb_001366_170 0.2655204711 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
19 Hb_003688_010 0.2678406551 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
20 Hb_000191_140 0.2682080881 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_430 Hb_001377_430 Hb_005539_370 Hb_005539_370 Hb_001377_430--Hb_005539_370 Hb_001621_120 Hb_001621_120 Hb_001377_430--Hb_001621_120 Hb_007810_090 Hb_007810_090 Hb_001377_430--Hb_007810_090 Hb_009748_010 Hb_009748_010 Hb_001377_430--Hb_009748_010 Hb_105959_010 Hb_105959_010 Hb_001377_430--Hb_105959_010 Hb_000100_060 Hb_000100_060 Hb_001377_430--Hb_000100_060 Hb_145655_010 Hb_145655_010 Hb_005539_370--Hb_145655_010 Hb_066778_010 Hb_066778_010 Hb_005539_370--Hb_066778_010 Hb_005539_370--Hb_007810_090 Hb_007632_100 Hb_007632_100 Hb_005539_370--Hb_007632_100 Hb_004774_030 Hb_004774_030 Hb_005539_370--Hb_004774_030 Hb_001621_120--Hb_000100_060 Hb_003893_060 Hb_003893_060 Hb_001621_120--Hb_003893_060 Hb_003376_370 Hb_003376_370 Hb_001621_120--Hb_003376_370 Hb_000977_200 Hb_000977_200 Hb_001621_120--Hb_000977_200 Hb_000816_190 Hb_000816_190 Hb_001621_120--Hb_000816_190 Hb_007810_090--Hb_000100_060 Hb_000742_160 Hb_000742_160 Hb_007810_090--Hb_000742_160 Hb_007810_090--Hb_007632_100 Hb_007810_090--Hb_066778_010 Hb_009748_010--Hb_000742_160 Hb_008566_040 Hb_008566_040 Hb_009748_010--Hb_008566_040 Hb_000765_060 Hb_000765_060 Hb_009748_010--Hb_000765_060 Hb_001606_060 Hb_001606_060 Hb_009748_010--Hb_001606_060 Hb_006405_030 Hb_006405_030 Hb_009748_010--Hb_006405_030 Hb_009748_010--Hb_007632_100 Hb_007925_010 Hb_007925_010 Hb_105959_010--Hb_007925_010 Hb_008725_080 Hb_008725_080 Hb_105959_010--Hb_008725_080 Hb_003813_180 Hb_003813_180 Hb_105959_010--Hb_003813_180 Hb_001289_020 Hb_001289_020 Hb_105959_010--Hb_001289_020 Hb_105959_010--Hb_000742_160 Hb_003408_010 Hb_003408_010 Hb_105959_010--Hb_003408_010 Hb_000100_060--Hb_000816_190 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.540715 0.00969335 1.89087 3.25932 0.181053 0.176621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293509 0.12596 0.594518 0.0585564 0.132459

CAGE analysis