Hb_000100_060

Information

Type -
Description -
Location Contig100: 159218-160762
Sequence    

Annotation

kegg
ID cic:CICLE_v10004917mg
description hypothetical protein
nr
ID XP_011045808.1
description PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
swissprot
ID Q06915
description Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1
trembl
ID A0A067E957
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012660mg PE=3 SV=1
Gene Ontology
ID GO:0042973
description probable glucan endo- -beta-glucosidase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00200: 160451-161237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000100_060 0.0 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
2 Hb_001621_120 0.1836718338 - - Zeamatin precursor, putative [Ricinus communis]
3 Hb_000816_190 0.2171143535 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007810_090 0.2194103899 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
5 Hb_002164_010 0.2264668637 - - Stellacyanin, putative [Ricinus communis]
6 Hb_001377_430 0.2301978289 - - PREDICTED: laccase-6 [Jatropha curcas]
7 Hb_000311_040 0.2403574154 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
8 Hb_054865_160 0.2470695805 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
9 Hb_001486_050 0.2479270751 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
10 Hb_003893_060 0.2522230343 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000707_040 0.2564550762 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
12 Hb_008185_020 0.2596115291 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
13 Hb_002217_280 0.2625237291 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007741_090 0.2637762244 - - Autophagy-related 8f -like protein [Gossypium arboreum]
15 Hb_004125_070 0.2643566566 - - Glycolipid transfer protein, putative [Ricinus communis]
16 Hb_128473_010 0.2649355143 - - -
17 Hb_000311_030 0.2666956411 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
18 Hb_000345_070 0.2674511187 rubber biosynthesis Gene Name: SRPP6 -
19 Hb_007632_100 0.2685117588 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
20 Hb_011287_040 0.2687103115 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000100_060 Hb_000100_060 Hb_001621_120 Hb_001621_120 Hb_000100_060--Hb_001621_120 Hb_000816_190 Hb_000816_190 Hb_000100_060--Hb_000816_190 Hb_007810_090 Hb_007810_090 Hb_000100_060--Hb_007810_090 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_001377_430 Hb_001377_430 Hb_000100_060--Hb_001377_430 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040 Hb_003893_060 Hb_003893_060 Hb_001621_120--Hb_003893_060 Hb_001621_120--Hb_001377_430 Hb_003376_370 Hb_003376_370 Hb_001621_120--Hb_003376_370 Hb_000977_200 Hb_000977_200 Hb_001621_120--Hb_000977_200 Hb_001621_120--Hb_000816_190 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_007810_090--Hb_001377_430 Hb_005539_370 Hb_005539_370 Hb_007810_090--Hb_005539_370 Hb_000742_160 Hb_000742_160 Hb_007810_090--Hb_000742_160 Hb_007632_100 Hb_007632_100 Hb_007810_090--Hb_007632_100 Hb_066778_010 Hb_066778_010 Hb_007810_090--Hb_066778_010 Hb_003536_090 Hb_003536_090 Hb_002164_010--Hb_003536_090 Hb_000236_210 Hb_000236_210 Hb_002164_010--Hb_000236_210 Hb_000375_140 Hb_000375_140 Hb_002164_010--Hb_000375_140 Hb_001269_100 Hb_001269_100 Hb_002164_010--Hb_001269_100 Hb_020831_060 Hb_020831_060 Hb_002164_010--Hb_020831_060 Hb_002164_010--Hb_000816_190 Hb_001377_430--Hb_005539_370 Hb_009748_010 Hb_009748_010 Hb_001377_430--Hb_009748_010 Hb_105959_010 Hb_105959_010 Hb_001377_430--Hb_105959_010 Hb_001195_410 Hb_001195_410 Hb_000311_040--Hb_001195_410 Hb_034507_040 Hb_034507_040 Hb_000311_040--Hb_034507_040 Hb_000311_040--Hb_000816_190 Hb_000291_160 Hb_000291_160 Hb_000311_040--Hb_000291_160 Hb_000311_040--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_000311_040--Hb_008185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128922 0.0118978 0.140801 0.715244 0.0538121 0.0270976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0327365 0.0257541 0.0483092 0.0308578 0

CAGE analysis