Hb_000345_070

Information

Type rubber biosynthesis
Description Gene Name: SRPP6
Location Contig345: 85056-83759
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35978: 83499-85119
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_070 0.0 rubber biosynthesis Gene Name: SRPP6 -
2 Hb_000532_090 0.2531339226 - - ATPase [delta proteobacterium MLMS-1]
3 Hb_000100_060 0.2674511187 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
4 Hb_148209_030 0.2734397184 - - hypothetical protein VITISV_017120 [Vitis vinifera]
5 Hb_004785_050 0.2817561385 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_002609_250 0.2831699732 - - PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]
7 Hb_001621_120 0.2907051034 - - Zeamatin precursor, putative [Ricinus communis]
8 Hb_005539_370 0.2925191972 - - ring finger protein, putative [Ricinus communis]
9 Hb_001804_030 0.2969766809 - - kinase, putative [Ricinus communis]
10 Hb_007810_090 0.3003339706 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
11 Hb_000046_270 0.3106276812 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
12 Hb_000028_260 0.3133285268 - - hypothetical protein glysoja_041948 [Glycine soja]
13 Hb_001369_500 0.3170191048 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_000003_850 0.3174629204 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
15 Hb_001946_370 0.3185091827 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001247_030 0.3210374974 - - -
17 Hb_001163_140 0.3215914012 - - -
18 Hb_054865_160 0.3217953611 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
19 Hb_000236_170 0.3238924448 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
20 Hb_004204_110 0.3243841085 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_070 Hb_000345_070 Hb_000532_090 Hb_000532_090 Hb_000345_070--Hb_000532_090 Hb_000100_060 Hb_000100_060 Hb_000345_070--Hb_000100_060 Hb_148209_030 Hb_148209_030 Hb_000345_070--Hb_148209_030 Hb_004785_050 Hb_004785_050 Hb_000345_070--Hb_004785_050 Hb_002609_250 Hb_002609_250 Hb_000345_070--Hb_002609_250 Hb_001621_120 Hb_001621_120 Hb_000345_070--Hb_001621_120 Hb_005914_220 Hb_005914_220 Hb_000532_090--Hb_005914_220 Hb_000302_110 Hb_000302_110 Hb_000532_090--Hb_000302_110 Hb_004925_030 Hb_004925_030 Hb_000532_090--Hb_004925_030 Hb_017862_040 Hb_017862_040 Hb_000532_090--Hb_017862_040 Hb_001741_110 Hb_001741_110 Hb_000532_090--Hb_001741_110 Hb_009111_060 Hb_009111_060 Hb_000532_090--Hb_009111_060 Hb_000100_060--Hb_001621_120 Hb_000816_190 Hb_000816_190 Hb_000100_060--Hb_000816_190 Hb_007810_090 Hb_007810_090 Hb_000100_060--Hb_007810_090 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_001377_430 Hb_001377_430 Hb_000100_060--Hb_001377_430 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040 Hb_001946_370 Hb_001946_370 Hb_148209_030--Hb_001946_370 Hb_006663_110 Hb_006663_110 Hb_148209_030--Hb_006663_110 Hb_000016_050 Hb_000016_050 Hb_148209_030--Hb_000016_050 Hb_003058_250 Hb_003058_250 Hb_148209_030--Hb_003058_250 Hb_002301_090 Hb_002301_090 Hb_148209_030--Hb_002301_090 Hb_004308_020 Hb_004308_020 Hb_004785_050--Hb_004308_020 Hb_128473_010 Hb_128473_010 Hb_004785_050--Hb_128473_010 Hb_000261_170 Hb_000261_170 Hb_004785_050--Hb_000261_170 Hb_159327_010 Hb_159327_010 Hb_004785_050--Hb_159327_010 Hb_007210_020 Hb_007210_020 Hb_004785_050--Hb_007210_020 Hb_003813_010 Hb_003813_010 Hb_004785_050--Hb_003813_010 Hb_011540_030 Hb_011540_030 Hb_002609_250--Hb_011540_030 Hb_000028_260 Hb_000028_260 Hb_002609_250--Hb_000028_260 Hb_001247_030 Hb_001247_030 Hb_002609_250--Hb_001247_030 Hb_002609_250--Hb_000532_090 Hb_011316_140 Hb_011316_140 Hb_002609_250--Hb_011316_140 Hb_003893_060 Hb_003893_060 Hb_001621_120--Hb_003893_060 Hb_001621_120--Hb_001377_430 Hb_003376_370 Hb_003376_370 Hb_001621_120--Hb_003376_370 Hb_000977_200 Hb_000977_200 Hb_001621_120--Hb_000977_200 Hb_001621_120--Hb_000816_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109019 0.0185624 0.0960897 0.673624 0 0.0191533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0809109 0.111027 0 0

CAGE analysis